Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00572 ATGGCGTCCAACCGGAACCTACTTGATCTCCAGTGGCTTCTCCAAGCTACCGATTCTGAAAGCCTGGACCTTCAAAACCTCTCATTTTACCTCTCACAACCCACTTCAGGCTGTTTATTAGAGACGGAAAACTCCGTTAATGTACACATTTCTCGCGACAGCTTTCCTCTCTTCTCCAACGTACTAACAGCTTTTACGACAGGGAAAAAAGCCCTAACTTCTCTGAGAAACCTAGAGTTTCATTGTGTGAATTGGGAAATAGAACAGCTTAGAAACTTCGCCGTGCTGCTGGACAACAGCTTGGAAATTAAGCGCGTCGTTTTTCGGAGAAACGGCTTCAGTAAAGATTGTTTATCCGAGCTCTGCGAGATTTTGAAGGGGATGAAAACCGTTAAAGAGATAATGTTCTCAGAATCAGCGATTGGGTCATTCGGGGCTGGGGTTCTTGCTTCGGCTCTGAAAGCGAACGACCGTTTAGAAGAATTGCAGATCTGGGAAGACTCAATTGGGTCAAAAGGGGCAGAAGAACTTTCGAAAATGATCGAAGCAAACTCGACTTTAAAGGTTTTGACAATCTTCGATTTGAGTTCAATCACTGCAACTCCTTTGATTTCTGCAGTTTTAGCTAGGAATAGAACAATGGAAGTTCATATATGGAGCAAAGAAAATGGAGAAAAAGTCACAAAGATTGTGGAATTCTTGCCTGCACACAGCACACTTAGAATTTACAAGCTTAACACGGCAGGTTCTTGCAGGGTAGCTTGTGCTTTAGGATGGAATTCTTCGGTTAAGTCGCTAGACATGACCGGAATCCGCCTGAAATCCCGGTGGGCTAGGGAATTCCGGTGGGTTTTGGAGCAGAATCAGAGCCTGAAGGAGTTAAACTTATCAAAAACTTGCTTAAAAAACAAAGGAGTTATTTATGTTGCTGTTGGATTATTCAAAAACCGCCATTTGGAAAGCTTGTATTTAGAAGGAAACTGGTTTGCCGCCATTGGAGTTGAGCATTTACTCTGTCCTTTCAGCAGATTCTCCACCCTGCAAATCCAAGCTAACACAACTCTCACTTCTCTGACATTTGGGGGAGGAAGGACCAAGATAGGAAGAACCGGGCTTCATGCCATTTTAGTGATGCTTCGAACTAACGAAAGCTTGATTCGGCTTGGGATTTGCGATGATCGAAGTCTAAAACCAGAAGATTTTGCCAAAATTTTCAAGAGTTTGGAGAAGAACACTAGTTTAAGACATTTATCATTGCAAGGCTGCAATGGAGTAGATGGAGATTTGGTGTTGCAGACATTGATGGAGACCTTAGAGGTCAATCCATGGCTTGAAGACATTGATCTGTCAAGAACTCCTCTGCAGAATTCTGGAAAAACCAGCAAGATTCATCAGAGATTGGGCCAGAACGGAAGAACGGAACCCGAAAAGGATCTGCTCAAGGACATGCCACTTACCGAGCCGCGAAGTTGCCGAGTTTTCATCTGCGGGGAAGAATTCGCAGGTAAAACTACACTATGTAACTCCATATCACAGAATTTCTCTTCTTCGAAGCTTCCATATGCGGACCAAGTTAGATCTTTAGTCAACCCAATAGAACAGTCCGTAAGAACAGTTGGAATGAAGATCAAAACCTTCAAATATGACAGCACAAAAATTTCAGTTTGGAATCTTTCTGGGCAGCATGAGTTTTGCTCCCTCCATGATCTCATGTTTCCGGGCCATGGAAGTGCATCGATTTTCTTCATTGTTTCAAGCTTATACAGAAAACCCAACAACAAAGAACCAAAAACTGCATCAGAAATCGAGGAGGACCTCCATTACTGGCTCAGATTCATTGTCTCAAACTCAAAAAGAGCAGTTCAACAGTGTATTCTTCCAAATGCGACTGTTGTTCTTACCCATTACGACAAGATCGTTCAACCGTCGGAGAATTTGCAGCTAATCGTGAATTCAGTCCAGAGTTTAAGGGATAAGTTCCAATGTTTTGTGGATTTCTACCCGACTTTATTCACAGTCGATGCAAGATCATCAGTGTCGGTAAACAAACTCACTCATCACCTTCGAAAAACGAGCAAGACTGTTCTTCAACGAGTCCCTCGAATTTACCAGCTATGCAATGACCTTGTTGAAAATTTAGCAGAATGGAGATCGGAAAACTTCAACAAGCCGGCAATGAAGTGGAAAGAGTTTGAAGAACTATGCCAAGTTAAAGTTCAACCGTTAAGAATTCGATCGAGAAGCAATCAAAAAGACAGAATGGAAACGAGGAGGAAGGCAATGGCTGTCTGCTTACACGAAATGGGAGAGGTTGTTTACTTTGATGAACTTGGAATTTTGGTATTAGACTGTGAGTGGTTCTATGGGGAAGTTCTAAGTCTGCTAACAAGATTAGAAAGTCGAAAGGGAAAGTCAGCTGAGAAAAATGGATTCATCAGCCGAAAAGAATTGGAGAAGATTCTGGGAGAGAGTCTACGCAGCCATATCCCTGGAATGCCGTCAAAGGTTTTCGAAAATTTGCAGGTCAGCGATCTTGTGAGGATGATGCTGAAACTCGAACTTTGTTACGAACAAGATAAATCCGATCCAAATTCTCCTTTATTGATCACCTCTCTTCTGAACGAAGGAAGAGGAAAGCCACAAAAATGGCAGATAACCGAATTCAACTGCGTCTATGCTGGCCGACATCTGAAGTGCGATGATTCGAGCCATATGTTTCTCACTGCTGGTTTCTTTCCTCATCGTTTTACCTTTTCATTGGAAATTCAGGTTAATCTCCATAACAAAATCATGGGGTTGAAGAACCAACATGGAGCGACATACAGTCTAGAAAAACATCTCATTATGATAACCATTGATGGAGTTTGTGTAAGAGTAGAGCTTGGTGGACATTTGGGCTACTACATTGATGTGCTGTTATGTTCCACCAAAAATCTCACTGAATCTCTGAGGTTGATCCACCAGCTCATAATACCCTCGATCCATGCCCTCTGCCATGGCATTACCTTGACGGAAAACGTGATTAGGCCAGAATCCGTGAGAATTTTGACACCCCCCAGATACAGGGAGACTCAGTTCGTTTCGTTGCAGAAACTTAAACAGGCTTTGCTTTCGGTGCCGGCAGATTGCATGTACGATTATAAGCACACTTGGGAACCCGTCATTGATGGAGGAAAACAAATTCTAATGTCGGGTTTTGATTTGGCTCGAGATCTTCTATCCGATGACGATTTCCGGGAAGTTTTGCGCAGAAGATATCACGATTTGTACAATCTCGCTGTAGAACTTCAAGTTCCGCCTGAAAGTAATCATGATATTGAGGATCAGTCATTATCCATCAACGAACAAGACAAAATTGAAGCCACTTTCGGCGGAATAGCCAAAGGGGTTGAAGCCGTTTTGAAGAGGCTTAAAATTATCGAACAAGAAATCCGAGATTTGAAGCAGGAGGTCCAAGGGCTGAGATATTACGAGCACCGCCTACTTATCGAGCTTCATCGGAAAGTAAACTTCCTTGTCAACTACAATATCAATGTCGAGGAGAGAAAAGTTCCCAACTTGTTCTACTTTGTCCGAACAGAAAACTACTCAAGAAAGCTCGTCACCTCCATCATTTCGGGCATGACAGCTCTGAGAATGCACATGTTATGTGAATTCCGACAGGAAATCCACGTCGTCGAAGATCAGGTCGGATGCGAAATTATGCAGATCGAGAACGAAGCGGTGAAGCTTTTGGCACCATACATGACAAAGTTCATGAAACTTCTGACATTTGCTATCAAGATAGGAGCTCATTTGGCTGCAGGAATGGGGCAATTGATACCAGATTTGAGTAAGGAAATTGCTCACTTAGCCAATTCATCCGTGTTCTACGGTACGGCCGGTGCAGCTGCTGCTGGAGTCGTGGGGGCGGCTGCTGTGGGCCAATCAAGGAGCATAGAACAAGATCAAAATACAGCTCAACAATGGGTGGTGGATTTCTTGAGGGAGAGGAAGTGCTCAACTGGAAAAGAAATTGCAGAAAAGTTTGGATTGTGGAGAGTTAGATACAGGGACAATGGCTGCATTGCGTGGATTTGTAGGAGACATATGACCCTTAGAGCCAATGAAATAGCTGAAGTACCCCTTTGA 4131 43.21 MASNRNLLDLQWLLQATDSESLDLQNLSFYLSQPTSGCLLETENSVNVHISRDSFPLFSNVLTAFTTGKKALTSLRNLEFHCVNWEIEQLRNFAVLLDNSLEIKRVVFRRNGFSKDCLSELCEILKGMKTVKEIMFSESAIGSFGAGVLASALKANDRLEELQIWEDSIGSKGAEELSKMIEANSTLKVLTIFDLSSITATPLISAVLARNRTMEVHIWSKENGEKVTKIVEFLPAHSTLRIYKLNTAGSCRVACALGWNSSVKSLDMTGIRLKSRWAREFRWVLEQNQSLKELNLSKTCLKNKGVIYVAVGLFKNRHLESLYLEGNWFAAIGVEHLLCPFSRFSTLQIQANTTLTSLTFGGGRTKIGRTGLHAILVMLRTNESLIRLGICDDRSLKPEDFAKIFKSLEKNTSLRHLSLQGCNGVDGDLVLQTLMETLEVNPWLEDIDLSRTPLQNSGKTSKIHQRLGQNGRTEPEKDLLKDMPLTEPRSCRVFICGEEFAGKTTLCNSISQNFSSSKLPYADQVRSLVNPIEQSVRTVGMKIKTFKYDSTKISVWNLSGQHEFCSLHDLMFPGHGSASIFFIVSSLYRKPNNKEPKTASEIEEDLHYWLRFIVSNSKRAVQQCILPNATVVLTHYDKIVQPSENLQLIVNSVQSLRDKFQCFVDFYPTLFTVDARSSVSVNKLTHHLRKTSKTVLQRVPRIYQLCNDLVENLAEWRSENFNKPAMKWKEFEELCQVKVQPLRIRSRSNQKDRMETRRKAMAVCLHEMGEVVYFDELGILVLDCEWFYGEVLSLLTRLESRKGKSAEKNGFISRKELEKILGESLRSHIPGMPSKVFENLQVSDLVRMMLKLELCYEQDKSDPNSPLLITSLLNEGRGKPQKWQITEFNCVYAGRHLKCDDSSHMFLTAGFFPHRFTFSLEIQVNLHNKIMGLKNQHGATYSLEKHLIMITIDGVCVRVELGGHLGYYIDVLLCSTKNLTESLRLIHQLIIPSIHALCHGITLTENVIRPESVRILTPPRYRETQFVSLQKLKQALLSVPADCMYDYKHTWEPVIDGGKQILMSGFDLARDLLSDDDFREVLRRRYHDLYNLAVELQVPPESNHDIEDQSLSINEQDKIEATFGGIAKGVEAVLKRLKIIEQEIRDLKQEVQGLRYYEHRLLIELHRKVNFLVNYNINVEERKVPNLFYFVRTENYSRKLVTSIISGMTALRMHMLCEFRQEIHVVEDQVGCEIMQIENEAVKLLAPYMTKFMKLLTFAIKIGAHLAAGMGQLIPDLSKEIAHLANSSVFYGTAGAAAAGVVGAAAVGQSRSIEQDQNTAQQWVVDFLRERKCSTGKEIAEKFGLWRVRYRDNGCIAWICRRHMTLRANEIAEVPL 1376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4385920 4390207 - Bpe003938.1 Bpe11g00572 110717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00572 1376 SUPERFAMILY RNI-like 62 460 - -
Bpe11g00572 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 607 IPR027417 -
Bpe11g00572 1376 Coils Coil 1130 1157 - -
Bpe11g00572 1376 Gene3D Ribonuclease Inhibitor 344 479 IPR032675 -
Bpe11g00572 1376 Gene3D Ribonuclease Inhibitor 51 222 IPR032675 -
Bpe11g00572 1376 MobiDBLite consensus disorder prediction 455 476 - -
Bpe11g00572 1376 Gene3D - 490 694 IPR027417 -
Bpe11g00572 1376 PANTHER PROTEIN TORNADO 1 1 1365 - -
Bpe11g00572 1376 Pfam Leucine Rich repeat 287 309 IPR001611 GO:0005515
Bpe11g00572 1376 Pfam Leucine Rich repeat 315 337 IPR001611 GO:0005515
Bpe11g00572 1376 Pfam C-terminal of Roc, COR, domain 720 895 IPR032171 -
Bpe11g00572 1376 SMART LRR_RI_2 128 155 - -
Bpe11g00572 1376 SMART LRR_RI_2 288 315 - -
Bpe11g00572 1376 SMART LRR_RI_2 156 183 - -
Bpe11g00572 1376 SMART LRR_RI_2 411 440 - -
Bpe11g00572 1376 SMART LRR_RI_2 316 343 - -
Bpe11g00572 1376 Gene3D Ribonuclease Inhibitor 228 338 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00572 - - - qsu:111991871 2099.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00572 Bpe-Chr11:4385920 Bpe14g01174 Bpe-Chr14:8788881 2.34E-09 dispersed
Bpe11g00572 Bpe-Chr11:4385920 Bpe10g00417 Bpe-Chr10:11627262 1.45E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g607 . . Bda07g00394 . . . . . . . . . Car01g00970 Car09g00896 Sed07g2724 Cpe06g00796 Cpe02g00804 Bhi09g01727 Tan01g3153 Cmetu01g0554 . Hepe01g1229 Mch11g1238 . . . . . . . . Cone6ag0031 Cone9ag0031 . . Lsi02g01858 Csa07g00975 . . . . . . Bpe11g00572 . . Bma14g00307 . Cmo01g01142 Cmo09g00987 . . . . . . . . . . . . . Cla09g02047 Cam09g2135 Cec09g2201 . . . . . . Chy01g01082 Cme01g00963
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006977 1 1 2 1 1 1 2 1 1 2 1 1 0 1 1 2 1 3 2 1 1 1 1 1 1 2 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00572 Bpe_Chr11 FPKM 12.08965 13.367282 8.658161 8.681323 13.797995 13.334467 14.982418 2.444341 2.45029 2.786391