Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00573 ATGGGAAGCCTGAAAGCAATTTCGGAAGATCTTAAACTCATAGATCTTAAGAAGGAGAGTTTGAAGAAGGCCTTCGATGCGCTCCAAGCTCACTCCTCCCTCCTCCCTTCCTTCTCTCTCACTTGGTCCGACATTGATTGCTACTTCACCTCCGTTCAAAACTCTCTTACTGAGAAATATTATCTCCTCGAGTCTTTAGAATCGCAGCAGAATCTAGAAAAAAAGGATGAATTCGTGGATTCTGTATCGCCTCGACCCGGACTGAAAGAGTTTTGTTTGAATATGGATGGAAGGGGTCTAAGAAATTACGTAATTTCCCAGCCGAAGGGTAAGGGCATCGACAGGATGGAGCTCGCTGGGGCCATTAATTGTGCTGAAGATCCGGCCAAGATGGTCTTAGATGCTATGGATGGTTTTTACAGCAACAATTTGAACTGTAAACGTGATAAAGATCCGGACTTATGTTTTGTGAGGAGAACTTGTTTAGTTTTGTTGGAAACTTTGATGGATAGTAATCCGAGTGTAGGCTTTCATGTCAAGGAAAGAGCAAGGACTTTAGCATTGGAGTGGAAAAAACATATGAGCACAAATGGCGAAAATCCATTAGAGGCATTGGGCTTTTTGCATCTGGTGGCAACATATGGTTTGAAATCAGAATTTGATTTGGAAGAACTTGTTGATTATTTCACTATCATTGGTCGGTATCGACAAGCTACCAAGTTGTGCAAGAACATTGGCTTGGGGAATAAAGTAGCCGATCTCGTTCAGAAACTGATTCGAAAAAGCAAACAACTTCTGGCCGTCAAATTTATTTTTGAGTTTGAGCTGACTAACAAATTCCCACCGGTCCCACTCTTGAAAGAGTACGTGAAGGAGTCCTCGGAGCTTGCTAAAAATGTCTGCAAGGAAGGACACAACTCTCTCAAGGCACAGAATGAAGCCACTTCCAAAGAAGTTGGTGCACTAAGATCCGTGATTAAAATGATTGAAGAGTACAATCTTGATTCTGAGTACCCAAAAGTAAATCTTGAGAAACGTATTGAGCTGTTGGAGAAGAAAAAGGCTGACAGAAAACGCCCAGCATCAGGTCCTCCAACAAAGACTAAGAAGCAGAAACTCGAACAAGTAAATTTACGGTCAATGAATCATATTCAAGTAAAGACAAACGCCCAGTGGCAAACTGGAAAACAACCCCGCAGAATGACTTCTATACTGAGTTCTAGAGCAATGCCAAGTGTTATTACTGGTGGAAATTCTGTTGTTACTCCATATCAACAATCTCACATACACTCATCAGATTCATTGTCAAATCATCCTGTTCCCTATGAAATTTTGTCTGCAGTGCCATACGACGTGGTGGGTTTGGCTCCCTCTGTGACCTCGTATCCTGGTGCATTTACGAGGGTATATGGTTTTGCAGAAAGCCATGAGGGGTCATCAGGCAATGCAGGCGCTGCTAATGCCCACCTATACCCAACAACAGCATCCTACTCCCAATCAGATTATTATGATCAGTCAGCTGTCTATGGTGCATATGGTATGCCTCATCATCCATCCTACCATTCTCAATAG 1572 42.62 MGSLKAISEDLKLIDLKKESLKKAFDALQAHSSLLPSFSLTWSDIDCYFTSVQNSLTEKYYLLESLESQQNLEKKDEFVDSVSPRPGLKEFCLNMDGRGLRNYVISQPKGKGIDRMELAGAINCAEDPAKMVLDAMDGFYSNNLNCKRDKDPDLCFVRRTCLVLLETLMDSNPSVGFHVKERARTLALEWKKHMSTNGENPLEALGFLHLVATYGLKSEFDLEELVDYFTIIGRYRQATKLCKNIGLGNKVADLVQKLIRKSKQLLAVKFIFEFELTNKFPPVPLLKEYVKESSELAKNVCKEGHNSLKAQNEATSKEVGALRSVIKMIEEYNLDSEYPKVNLEKRIELLEKKKADRKRPASGPPTKTKKQKLEQVNLRSMNHIQVKTNAQWQTGKQPRRMTSILSSRAMPSVITGGNSVVTPYQQSHIHSSDSLSNHPVPYEILSAVPYDVVGLAPSVTSYPGAFTRVYGFAESHEGSSGNAGAANAHLYPTTASYSQSDYYDQSAVYGAYGMPHHPSYHSQ 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4391744 4393824 + Bpe003939.1 Bpe11g00573 110718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00573 523 MobiDBLite consensus disorder prediction 354 373 - -
Bpe11g00573 523 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 12 433 - -
Bpe11g00573 523 Pfam Frigida-like protein 81 360 IPR012474 -
Bpe11g00573 523 PANTHER INACTIVE FRIGIDA-LIKE PROTEIN 2 12 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00573 - - - cmo:103501231 476.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01887 Bpe-Chr2:20841997 Bpe11g00573 Bpe-Chr11:4391744 8.69E-23 dispersed
Bpe02g01888 Bpe-Chr2:20857293 Bpe11g00573 Bpe-Chr11:4391744 2.18E-51 dispersed
Bpe03g00882 Bpe-Chr3:28584284 Bpe11g00573 Bpe-Chr11:4391744 5.72E-50 dispersed
Bpe11g00573 Bpe-Chr11:4391744 Bpe13g01082 Bpe-Chr13:16373336 2.11E-39 dispersed
Bpe11g00573 Bpe-Chr11:4391744 Bpe09g00297 Bpe-Chr9:2380359 2.38E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g611 Blo03g00526 . Bda07g00395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00573 . . Bma14g00306 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002407 4 3 3 3 1 1 2 1 2 2 1 1 2 2 2 1 1 4 2 2 1 1 0 2 2 1 2 5 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00573 Bpe_Chr11 FPKM 39.290691 43.71265 34.136047 33.647678 47.192406 51.116154 49.555275 34.432301 36.496716 36.914196