Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00574 ATGGCGCTCGAGTATTTCACTTTGGGTCCACCCACATACATTATTGGTTCGAAATCTCTCTCTTTCTCGTATTTCCGTCGCTGTATGCCATCACCAGTGAAGATTGTGCAGAGTAACTATCGTTTCCCGATTTGTCTTTCCTCTAATTGCATTCAATTCCGCTGTTCTGGATGCTCGTCTAGTTTGAGAAGCTCAGGAATCCGATTTCCAGAACATAGAGCTCGTTTGAGACATGGAGTCGATGATTCTGAGATTTCAAGCAGTAGAAATGCTGTTTCGGATGCCAATTCAGGCTTTCTCAGAAGTTGGATGAAGCGTGGTGTTGTGTTGGCTGCAATGTTGACTGGATTTTTGGTATTTGGATGTGAAAAAGTTTTTGCAGTAGAAGATGTTGTCAATGCTGGCTATGGAGTATTTGGGCAGAGCATTTTGTTGCTCAGGAATGCTTGGCCCAAGATATCGCAGGTTCTCCAGGTTTTCAAGGAGCAGGGTTTGATTTTAGCCGCCCTTTTAGGCCTTTCAGCATTTTTCTCCATGGCTGAGACTTCAATTACCACTCTTTGGCCTTGGAAGGTACGTGAGTTAGCTGAAAAAGAATCTGAAGATGGTGTATTCAAAATGCTTCGTAGTGATGTTACTCGGTTCCTCACCACTATTCTCATTGGCACAACTGTGGTTAATATTGGAGCAACTGCTTTAGTCACAGAGGCTGCAACTGCAATATTTGGAGAAGCTGGTGTTAGTGCAGCGACAGGAGTAATGACGGTAGCCATTTTACTTCTCACGGAACTCACTCCAAAAAGTATTGCTGTGCACAATGCAACTGAAGTTGCTAGAGTTGTGGTTAGGCCAGTTGCTTGGCTTTCTCTGGTTTTATATCCTGTTGGAAGAATTGTCACATTCATATCAATGGGGATGTTAAAAATGCTTGGCTTGAAAGGGCGTAGTGAGCCATATGTGACTGAAGAGGAGCTGAAATTGATGTTACGAGGGGCCGAATTAAGTGGAGCTATTGAGGAGGAAGAACAGGATATGATAGAGAATGTATTAGAAATAAAAGATACGCATGTTAGGGAGGTTATGACACCGCTAGTTGATGTGGTTGCAATAGACTCAAGTTCAACTCTCATAGACTTTCACAACTTATGGCTGACACATCAGTATTCCAGGTACAGTAAACCTATAGTAAAATTTAGGTCAACTCTTGTCTTTTTTTTTTCCTTTCTTCTTTACCTTGATTACGTTTGTAGGGTACCTGTATTTGAGCAGCGTGTTGACAATATTGTGGGAATTGCATATGCAATGGATTTGCTTGATTATGTCCAGAAGGGCGACCTACTAGAGAGTACAACTGTCGGGGATATGGCTCATAAACCTGCTTACTTTGTCCCTGATTCAATGTCTGTCTGGAATCTTCTTAGAGAGTTTCGTATTCGGAAAGTGCACATGGCCGTTGTTCTTAATGAGTATGGAGGCACCGTGGGATTAGTGACCTTGGAAGATGTGGTTGAGGAAATTGTCGGTGAAATCTTTGATGAAAATGATTCAAAGGAGGAAATCCAAAAGAAAACTGGCTACATTGTGATGCGGGCAGAAGGTGTATATGACGTGGATGCAAACACTTCAATTGATCAGCTCTCTGAAGATTTAAACATTAAAATGCCTGAGGGTCATCAATATGAGACGGTGTCAGGCTTCATCTGCGAAGCTTTTGGATATATCCCGAGGACTGGTGAGAACATCAAAGTGGTTCTTGAAAAGGAAAATCAAGAAGACAATGAAGAGGCCACTCCGGACCACCAGAATCAGAAGGACAAGCATCTGATTTTTAAGATTGAGATTCTAGCTGGAAATGCCAGAAAGGTGAGTGCAGTTCGATTCGAGAGTGTAAGTGATGACGAAGATGATGTCACAGTGCTGGAAAGCAAAGGGGTGGCTAGTTTGGTTCCCAAATTAATGAAGAGAAAATGGAGCAGTGATGAGGATTCAAGTAGTGTAGAAAATGGCGAGGATTCATATTCACAGAAACCCATTGAAGACGTGTTAAATGACGATCAGAATTCATAA 2067 42.19 MALEYFTLGPPTYIIGSKSLSFSYFRRCMPSPVKIVQSNYRFPICLSSNCIQFRCSGCSSSLRSSGIRFPEHRARLRHGVDDSEISSSRNAVSDANSGFLRSWMKRGVVLAAMLTGFLVFGCEKVFAVEDVVNAGYGVFGQSILLLRNAWPKISQVLQVFKEQGLILAALLGLSAFFSMAETSITTLWPWKVRELAEKESEDGVFKMLRSDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTELTPKSIAVHNATEVARVVVRPVAWLSLVLYPVGRIVTFISMGMLKMLGLKGRSEPYVTEEELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDSSSTLIDFHNLWLTHQYSRYSKPIVKFRSTLVFFFSFLLYLDYVCRVPVFEQRVDNIVGIAYAMDLLDYVQKGDLLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGLVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFICEAFGYIPRTGENIKVVLEKENQEDNEEATPDHQNQKDKHLIFKIEILAGNARKVSAVRFESVSDDEDDVTVLESKGVASLVPKLMKRKWSSDEDSSSVENGEDSYSQKPIEDVLNDDQNS 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4396614 4406711 + Bpe003940.1 Bpe11g00574 110719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00574 688 MobiDBLite consensus disorder prediction 655 688 - -
Bpe11g00574 688 Gene3D - 525 626 IPR016169 -
Bpe11g00574 688 ProSiteProfiles CNNM transmembrane domain profile. 156 342 IPR002550 -
Bpe11g00574 688 ProSiteProfiles CBS domain profile. 455 513 IPR000644 -
Bpe11g00574 688 Gene3D - 455 517 - -
Bpe11g00574 688 SUPERFAMILY CBS-domain pair 344 510 IPR046342 -
Bpe11g00574 688 PANTHER HEMOLYSIN-RELATED 41 391 - -
Bpe11g00574 688 SMART CorC_HlyC_2 528 631 IPR005170 -
Bpe11g00574 688 PANTHER BNAC03G73630D PROTEIN 41 391 - -
Bpe11g00574 688 PANTHER BNAC03G73630D PROTEIN 400 676 - -
Bpe11g00574 688 Pfam Cyclin M transmembrane N-terminal domain 165 342 IPR002550 -
Bpe11g00574 688 Pfam Transporter associated domain 529 629 IPR005170 -
Bpe11g00574 688 CDD CBS_pair_CorC_HlyC_assoc 356 504 IPR044751 -
Bpe11g00574 688 Pfam CBS domain 452 507 IPR000644 -
Bpe11g00574 688 Gene3D - 336 399 IPR046342 -
Bpe11g00574 688 PANTHER HEMOLYSIN-RELATED 400 676 - -
Bpe11g00574 688 SUPERFAMILY FAD-binding/transporter-associated domain-like 526 635 IPR036318 GO:0050660
Bpe11g00574 688 Gene3D - 414 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00574 - - - mnt:21392823 950.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00574 Bpe-Chr11:4396614 Bpe12g00728 Bpe-Chr12:12789496 2.61E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g623 . . Bda07g00396 . . . . . . . Cma01g01088 . Car01g00964 . . . . . . . . . . . . . . . . . . Cone6ag0023 Cone9ag0023 . . . . . . . . . . Bpe11g00574 . . Bma14g00305 . Cmo01g01134 . . . . . . . . . . . . . . Cla09g02052 Cam09g2140 Cec09g2207 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005841 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 2 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00574 Bpe_Chr11 FPKM 38.560001 40.38448 49.116962 49.671143 46.339355 47.921661 44.726086 58.831017 62.174282 59.791885