Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00579 ATGTCTGTGAATGGCCATTGTTTTGTGGAGTGGAAGGAGCATTTTGTCTCACAAGAGCGAGGCAGCAGAGTGGTGCACTATTTTTTGAAGGATTCTAATGGGGTATCCATTCTTGCTGTTGTGGGCACTGAGAGGAGTATTAGACACATGTTCTATGTCGTTGCAAATGAATTTTTGCAAGCTTATGGCCCTGAAAGTTCTGTTCATAGTGGTTTTAAATGGAGATCTAGAAGAGAGGTTGTGGATTGGCTAACTTCTATGCTTTCGAAGCAGCATTTACATGGGGAGCATTCTGAACTGCTGAAATATAATTCTAATCGGTCAGTTGAAACTCTTCTGTTTTCAAAGAAGGGAGTAAGTGACTCACTCGACAATGCCCCTGATGGCAAGTTCTGTCGTGCGAGAGATTGTGATGGACCGGATTCTGACATTGTTTGGTCGGGCACTGCATGGATCTGTGGGAAGCAGCTTAAGCACTACCCTGAATTTTCCAGGAATGGAACTTCAATAGCGATTCAATCGTTCGTCTTTATCATGGCTAAGGGAGATAATCAGTACCTTGCTTACTTGGAAGATATGTATGAAGACAAAAGAGGCCAAAAAAAGGTCAAAGTAAGATGGTTTCACCATAGCCAGGAGGTGAAAGGGGTGATTCCTCTTCGAAATTCACACCCAAAAGAAGTATTTATGACACCATATGCACAAACAATCAGTGCTGAGTGCGTTGATGGCCCGGCGGCGATCCTAACTCGAGAACATTACAAAAGATGCCTTGATGCTTTCCCTCATGCTTTGTCCTGCAGAATCCATTTTTGTTATAGGCAGTTTAGGAGTAATAAATTGAAGCCTTTCAACTTGAGTAAACTGCGTGGCTATTTGAATCAGCCCATTCTCTCTTGTTTGGATTTCAGTGTCATCCAAAAACCAGATTTGGCATGTGATAGTTTAACTGCGCATGAAGATGCAGAGCTAACCCCAGATGTCTCGAAAAAATTAGGAGCTAAGAGGCGAAACAGTAAAGGATGTGAGGAGTTTGAATTTGAAAACTCGAGAATTTTTAGCAAATGTCAGAAGATGGTCACAGATGAACAATGCAAAAGCTTTAAGTTTAGGCTATCAAACAGGAGAATGCTTTCTTGCAATCATGTTGAAGTTAACAAAAAAATAGAGGTGTTGTGTCAAGATAGCGGAATCCGGGGATGCTGGTTCAGATGTTCCATCTTGCGTCTATCGGGAAAACTAATTAGAGTTCGATATGATGATTTGGTAGATGAAGATGGTTCTGGCAATCTTGAGGAATGGATCCCAGCTTTTAAAATAGCTTTGCCTGACAAACTTGGCATGAGGCACTCTGGTCGTCCGACCATACGGCCAGCCCTCCAAGAACCAACCGAACTAGGTATCAAAATTGGTGTTGCTGTTGATGCTTGGTGGAGTGATGGCTGGTGGGAAGGAGTCATTACTGGAATTAACGACTTGGACAACGATCTCATGCATATTTTCTTGCCAGGCGAAAATTTATTCTTGGATATACCAAAAAAGGATCTTAGAGTATCCAAAGATTGGTTGGGAGATTCCTGGACTGATATTGAAGCAAAGCCTGACATTCTTTTAGCCATATCTTCAATGGTTAGCTCCGACACCAAGCTCGCCATGTCCTCTAATACTGTTGAGGGTGTCAAATCCGGTAGTTTCGATACATCAAATGTTGAATTTGTTCCACCCACGACTAAAAATAGTCACGATGATGGAAGCAATTCTCCCGATGATAGCAAAAACGACAAAGATGACGAAGGCGAGGATAATAACGAGTCTAATATAGAAATAGATGCGTCCGAACTGCCTAGAGAGAACTTACAGCAGGAGTTACGGAATTGGTAG 1881 42.21 MSVNGHCFVEWKEHFVSQERGSRVVHYFLKDSNGVSILAVVGTERSIRHMFYVVANEFLQAYGPESSVHSGFKWRSRREVVDWLTSMLSKQHLHGEHSELLKYNSNRSVETLLFSKKGVSDSLDNAPDGKFCRARDCDGPDSDIVWSGTAWICGKQLKHYPEFSRNGTSIAIQSFVFIMAKGDNQYLAYLEDMYEDKRGQKKVKVRWFHHSQEVKGVIPLRNSHPKEVFMTPYAQTISAECVDGPAAILTREHYKRCLDAFPHALSCRIHFCYRQFRSNKLKPFNLSKLRGYLNQPILSCLDFSVIQKPDLACDSLTAHEDAELTPDVSKKLGAKRRNSKGCEEFEFENSRIFSKCQKMVTDEQCKSFKFRLSNRRMLSCNHVEVNKKIEVLCQDSGIRGCWFRCSILRLSGKLIRVRYDDLVDEDGSGNLEEWIPAFKIALPDKLGMRHSGRPTIRPALQEPTELGIKIGVAVDAWWSDGWWEGVITGINDLDNDLMHIFLPGENLFLDIPKKDLRVSKDWLGDSWTDIEAKPDILLAISSMVSSDTKLAMSSNTVEGVKSGSFDTSNVEFVPPTTKNSHDDGSNSPDDSKNDKDDEGEDNNESNIEIDASELPRENLQQELRNW 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4419244 4422248 - Bpe003944.2 Bpe11g00579 110724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00579 626 MobiDBLite consensus disorder prediction 560 626 - -
Bpe11g00579 626 SMART agenet_At_2 466 524 IPR014002 -
Bpe11g00579 626 SMART BAH_4 168 287 IPR001025 GO:0003682
Bpe11g00579 626 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Bpe11g00579 626 PANTHER OS07G0607300 PROTEIN 4 603 - -
Bpe11g00579 626 Pfam Agenet domain 387 458 IPR008395 -
Bpe11g00579 626 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 603 - -
Bpe11g00579 626 Gene3D - 140 294 IPR043151 -
Bpe11g00579 626 MobiDBLite consensus disorder prediction 560 582 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00579 - - - qsu:111986205 743.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01023 Bpe-Chr2:10559108 Bpe11g00579 Bpe-Chr11:4419244 4.35E-161 dispersed
Bpe05g00570 Bpe-Chr5:19820949 Bpe11g00579 Bpe-Chr11:4419244 9.75E-11 dispersed
Bpe07g00183 Bpe-Chr7:1235134 Bpe11g00579 Bpe-Chr11:4419244 9.94E-09 dispersed
Bpe11g00579 Bpe-Chr11:4419244 Bpe01g00083 Bpe-Chr1:531993 1.09E-08 dispersed
Bpe11g00579 Bpe-Chr11:4419244 Bpe02g02274 Bpe-Chr2:23580842 1.28E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g638 . . Bda07g00399 . . . . . . . Cma01g01084 . Car01g00960 Car09g00907 . . Cpe02g00814 . . . . . . . . . . . . . . Cone6ag0017 Cone9ag0016 . . . . . . . . . . Bpe11g00579 . . Bma14g00175 . Cmo01g01130 Cmo09g00997 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003848 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00579 Bpe_Chr11 FPKM 0.284832 0.376297 0.122217 0.0 0.235621 0.276495 0.0 0.0 0.0 0.0