Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe11g00587 | ATGGCTGAATCAGAGGACGAGTCCGGAGGCGGACAGACCACAGGGAGGAGCACGAACAGGGGGCTGTCGTTACGGGAGCAGGACCGGCTGTTGCCGATAGCGAACGTAGGAAGGATCATGAAGAAGGCGCTACCGGCGAACGGGAAGATCTCGAAGGAAGCGAAGGAGACGGTGCAAGAGTGTGTATCGGAGTTCATCAGCTTCATCACCGGAGAGGCGTCAGAAAAGTGTCAGAGAGAGAAGCGGAAGACGATAAACGGAGACGACTTGCTGTGGGCGATGACGACGTTAGGGTTCGAGGACTACGTGGAACCTCTGAAGATTTACTTGCAGCAGTTCAGAGAGATGGAAGGCGAGAAGTGCGTGGGGGCGCGTGGGAGAGAAGGCGGTGGGGAGGAAGGGAGTGGGTTCGTGGGTGGGACTGGAACAGGGGCGGGGATGATGATGATGACGATGGGTCAGCATCAGCTGGAGCATCGCCAAGGACACCTGTATGGATCATCAGGCGCACATCCGACGGCTGTGAGTGGCGCTGGGTACTGCGGGCGTGGGCCAGGCTACTCTAGCCGCGTGTCTAACAGTGGAAGGCCGTCATAG | 597 | 58.63 | MAESEDESGGGQTTGRSTNRGLSLREQDRLLPIANVGRIMKKALPANGKISKEAKETVQECVSEFISFITGEASEKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQQFREMEGEKCVGARGREGGGEEGSGFVGGTGTGAGMMMMTMGQHQLEHRQGHLYGSSGAHPTAVSGAGYCGRGPGYSSRVSNSGRPS | 198 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 4466290 | 4466886 | + | Bpe003952.1 | Bpe11g00587 | 110732 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe11g00587 | 198 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Bpe11g00587 | 198 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 164 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
| Bpe11g00587 | 198 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 94 | IPR003958 | - | |
| Bpe11g00587 | 198 | Gene3D | Histone, subunit A | 21 | 161 | IPR009072 | GO:0046982 | |
| Bpe11g00587 | 198 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 | 1 | 164 | - | - | |
| Bpe11g00587 | 198 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
| Bpe11g00587 | 198 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - | |
| Bpe11g00587 | 198 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - | |
| Bpe11g00587 | 198 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 61 | 77 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
| Bpe11g00587 | 198 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
| Bpe11g00587 | 198 | MobiDBLite | consensus disorder prediction | 175 | 198 | - | - | |
| Bpe11g00587 | 198 | SUPERFAMILY | Histone-fold | 27 | 120 | IPR009072 | GO:0046982 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bpe09g00129 | Bpe11g00587 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe11g00587 | Bpe-Chr11:4466290 | Bpe14g00737 | Bpe-Chr14:5698458 | 2.31E-65 | dispersed | |
| Bpe06g00510 | Bpe-Chr6:16289772 | Bpe11g00587 | Bpe-Chr11:4466290 | 1.53E-44 | transposed | |
| Bpe09g00591 | Bpe-Chr9:14658037 | Bpe11g00587 | Bpe-Chr11:4466290 | 2.00E-33 | transposed | |
| Bpe11g00587 | Bpe-Chr11:4466290 | Bpe09g00129 | Bpe-Chr9:873594 | 1.29E-74 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 22044 | PF00808 | CBFD_NFYB_HMF | 1.70E-27 | CL0012 | Bpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe11g00587 | K08065 | - | mnt:21401200 | 221.476 |