Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00590 ATGAGAATAGAGCTTGGTGGCGCATTTGCTGACCTTCTTAATGAGAAAGGGAAAGGCTCTGGTGATAATGAGATGGGATACGTTGAACGAACTCTTGGCTTTCGCACGCGTGATTTAGAAGATCGTGATCTTAGATTGGTAACAGATATTGTTGGCGGAACGATTCGTTGGAGGAGGTATTTGGACCATCTGATTACTTCTCTATGCCATGATGAGAATACTTTTAAGGGCATGGAACCTCTTCTCATTCAGATCCTCCGAATCGGTTTCTATGAGATTCTCAAGCTAGATATGCCCCCATATGCTGTTGTAGACGAGAATGTAAAGCTTGCTAAGGTAGCCCTTAGACCTGGTGCTGGAAACTTGGTCAATGGAATCCTTCGAAAGCTTCTTTTGCTGAAGGAAAAAAACTCTCTTCCTCTACCTAAAGTGGAAGGTGATGATCGGGCAAAAGCAAGAGCTCTTGCAACTCTGCATTCCCATCCTGTTTGGATGGTTAGGCGATGGACAAAGTATCATGGGCAAGAAGAAGCTATTAGATTGATGGAGTGGAATAACAGTGAACCGAGTTATAGCTTGAGGGCAAACAGTGGGAATGGTGTTTCAAGAGCTGATCTTATTACAAGGCTCAGTTTGTTAAAGGTCCCGCATGATATTTCTTTGCACTTGGATGATTTTGTTCGAATCAAAACTGGATTGCAGGTAATCATACAAGCTGGGTTATTTAAAGAAGGGTTGTGTTCAGTGCAAGATGAGAGTGCCGGTCTTGTAGTTTCTGTCTTAAATCCTCAGCCTGGTGAGAGCATTATTGATTGTTGTGCTGCTCCAGGAGGAAAAACACTCTGTATAGCTTCCCAATTAAAAGGCCAAGGTAGTACAATATATGCTATCGACATCAATAAAGGTCGTTTACGAATCCTTAAAGAGACAGCAGAGTTACACAAATTAGATGGGATTATCACTACCATTCACAGTGATCTTCGACAATTTTCTGAAAAACATCCTGTGAAGTGTGACAAAGTTCTGTTGGATGCTCCTTGCTCTGGATTAGGGGTTCTATCCAAGAGAGCTGACTTGCGTTGGAATAAGAAACTAGAGGACATGGAGGAGCTTAAGAATTTACAGGATGAACTTCTTGATGCAGCTTCCATATTAGTAAAGGAGGGTGGAGTTTTGGTCTATAGTACCTGCTCAATAGATCCTGAAGAGAATGAAGGGAGGGTTGCTGCATTTCTTTCAAGGCACCTAGAATTTTCGGTAGATCGTGTTGACAAATACGTACCACATCAATTCACGACAAAGGATGGTTTCTATTTCTCTAATCCGATAAAACATTCACTTGACGGCTCCTTCGCTGCTCGTCTTGTTCGAGGATCGTGA 1380 42.32 MRIELGGAFADLLNEKGKGSGDNEMGYVERTLGFRTRDLEDRDLRLVTDIVGGTIRWRRYLDHLITSLCHDENTFKGMEPLLIQILRIGFYEILKLDMPPYAVVDENVKLAKVALRPGAGNLVNGILRKLLLLKEKNSLPLPKVEGDDRAKARALATLHSHPVWMVRRWTKYHGQEEAIRLMEWNNSEPSYSLRANSGNGVSRADLITRLSLLKVPHDISLHLDDFVRIKTGLQVIIQAGLFKEGLCSVQDESAGLVVSVLNPQPGESIIDCCAAPGGKTLCIASQLKGQGSTIYAIDINKGRLRILKETAELHKLDGIITTIHSDLRQFSEKHPVKCDKVLLDAPCSGLGVLSKRADLRWNKKLEDMEELKNLQDELLDAASILVKEGGVLVYSTCSIDPEENEGRVAAFLSRHLEFSVDRVDKYVPHQFTTKDGFYFSNPIKHSLDGSFAARLVRGS 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4484421 4488853 - Bpe003955.1 Bpe11g00590 110735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00590 459 PRINTS RNA (C5-cytosine) methyltransferase signature 440 457 IPR023267 GO:0001510
Bpe11g00590 459 PRINTS RNA (C5-cytosine) methyltransferase signature 389 405 IPR023267 GO:0001510
Bpe11g00590 459 PRINTS RNA (C5-cytosine) methyltransferase signature 270 280 IPR023267 GO:0001510
Bpe11g00590 459 PRINTS RNA (C5-cytosine) methyltransferase signature 339 351 IPR023267 GO:0001510
Bpe11g00590 459 PRINTS RNA (C5-cytosine) methyltransferase signature 241 255 IPR023267 GO:0001510
Bpe11g00590 459 CDD AdoMet_MTases 269 395 - -
Bpe11g00590 459 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 1 458 IPR023267 GO:0001510
Bpe11g00590 459 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 35 456 IPR004573 GO:0006364|GO:0008649
Bpe11g00590 459 SUPERFAMILY NusB-like 28 165 IPR035926 -
Bpe11g00590 459 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 181 458 IPR001678 GO:0008168
Bpe11g00590 459 Gene3D - 20 142 IPR035926 -
Bpe11g00590 459 PRINTS Viridiplantae FMU-related RCMT signature 22 38 IPR023268 -
Bpe11g00590 459 PRINTS Viridiplantae FMU-related RCMT signature 416 428 IPR023268 -
Bpe11g00590 459 PRINTS Viridiplantae FMU-related RCMT signature 138 151 IPR023268 -
Bpe11g00590 459 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 1 458 - -
Bpe11g00590 459 Pfam NusB family 28 130 IPR006027 GO:0003723|GO:0006355
Bpe11g00590 459 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 153 457 IPR029063 -
Bpe11g00590 459 Coils Coil 368 388 - -
Bpe11g00590 459 Gene3D Vaccinia Virus protein VP39 255 459 IPR029063 -
Bpe11g00590 459 Pfam 16S rRNA methyltransferase RsmB/F 259 455 IPR001678 GO:0008168
Bpe11g00590 459 Gene3D Sun protein; domain 3 148 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00590 K03500 rsmB, sun; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] - jre:108994543 744.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00391 Bpe-Chr11:2982689 Bpe11g00590 Bpe-Chr11:4484421 1.83E-07 dispersed
Bpe11g00590 Bpe-Chr11:4484421 Bpe15g00245 Bpe-Chr15:13742911 2.75E-12 dispersed
Bpe11g00590 Bpe-Chr11:4484421 Bpe11g00594 Bpe-Chr11:4507806 9.51E-27 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g678 Blo03g00505 . Bda07g00413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0007 . . . . Csa07g00858 . . . . . . Bpe11g00590 . . Bma14g00679 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01039 Cme01g01121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016633 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00590 Bpe_Chr11 FPKM 11.194578 13.377569 28.897898 28.078114 11.643208 12.929599 12.131394 46.155308 48.575516 48.780163