Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00597 ATGAATTCTCCTGCCACTGGAATCCAAATCCAAATCCAAATCCGGCATCCTTATTCCGTTTCTTCGTTCTGGGTTAGAATGGCAACCAGGATGTCTAGAGCTAGATGGTTCATTTTCTTAAGAAAAGTATTTCACTACCAGAACAGTTCGAGATCCGATCTGGGTTCTAGTCCTTTAAATTCCAGAACCTGGATAATGATGGAGCTTATTGCTTTGGTAGCTCAGATAAGTTTGATAGTATTTACTCTACATATATCTAAGAGTGAGAAGCCAGTTTGGCCTATGAGACTGTGGATTACTGGTTATGGTATTGGTTGCTTCCTCAGTTTGCTCTTGCTCTTCGGTCGATATAGGTTTCTTTGTCTGAATCTTTCTGATGTGGAGCAGCCTAACAGAGACAGTGAAGAATCAAGGTATGCTTCAACAGTTTTATCTAATAAATTTTGCACCAAAATTGTTAATGATATGGAGAGTTTACAAGTTCTAGACGGTATGTGGATTTCTTTGTTGTCATCTACAAGGACCTCGTATTTGAGAAGCAAATGCCAAACATCTCTCGAGCTTTTCTTCGCAATATGGTTTGTCATCGGCAATGTTTGGATATTCGACTCTCGCTTCGGTTCCTACGACCAAGCCACAAAACTCCACTTCCTCTGCATATCACTCTTATCATGGAACGCCATTTGCTACTCCTTTCCATTCCTCCTTTTCCTTCTGCTCTGCTGCTTTGTGCCGTTGGTCAGCCGCTTTTTAGGCTATAACATGAACGTAGGTTCGGCCAATCGAGGAGCCTCCGACGAACAGCTATCTCAGTTGCCTAGCTGGAGATATAAATCGGTTAAAGTTGATTTAGAGCTTGAAACGGACTTGGAAAGCAATTCCGCCCTAGAAACCGAAGAAGATCTGGTAAGTTTGAATCCATTCTTCATGATCTTTGTTTTTCTTTACTGTCAGGAATGCTGTATTTGTCTTGCAAAGTATATGGAGAGGGAGAAAGTGAGGGAGTTGCCTTGCTCACATATGTTTCATCTCAAGTGTGTTGATCAATGGCTGAGAATCATCCCCTGTTGCCCACTTTGCAAACAAGAGCTAGACAGTAGTACGTGA 1107 41.82 MNSPATGIQIQIQIRHPYSVSSFWVRMATRMSRARWFIFLRKVFHYQNSSRSDLGSSPLNSRTWIMMELIALVAQISLIVFTLHISKSEKPVWPMRLWITGYGIGCFLSLLLLFGRYRFLCLNLSDVEQPNRDSEESRYASTVLSNKFCTKIVNDMESLQVLDGMWISLLSSTRTSYLRSKCQTSLELFFAIWFVIGNVWIFDSRFGSYDQATKLHFLCISLLSWNAICYSFPFLLFLLLCCFVPLVSRFLGYNMNVGSANRGASDEQLSQLPSWRYKSVKVDLELETDLESNSALETEEDLVSLNPFFMIFVFLYCQECCICLAKYMEREKVRELPCSHMFHLKCVDQWLRIIPCCPLCKQELDSST 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4542952 4544523 + Bpe003962.2 Bpe11g00597 110742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00597 368 SMART ring_2 320 360 IPR001841 -
Bpe11g00597 368 Pfam Ring finger domain 319 361 IPR001841 -
Bpe11g00597 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 367 IPR013083 -
Bpe11g00597 368 ProSiteProfiles Zinc finger RING-type profile. 320 361 IPR001841 -
Bpe11g00597 368 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 18 365 - -
Bpe11g00597 368 SUPERFAMILY RING/U-box 319 365 - -
Bpe11g00597 368 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00597 Bpe-Chr11:4542952 Bpe14g00565 Bpe-Chr14:4815386 4.62E-51 dispersed
Bpe11g00597 Bpe-Chr11:4542952 Bpe02g01228 Bpe-Chr2:15913249 4.10E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00597 - - minc:123228912 404.445