Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00603 ATGCCGCAAGAGAGCTATTCCGGCTCCATTTTCACGTCACCTGGGAAGAACTTGAGAGGGCTCAAAGCTCTAGTTTGTAATAACAACGAGGCTTCCTTTACCGACGAGATTATCAACGACGATGAGTTGGCTCAGAGGAAAGCTGAAGAAGCAGCTTCAAGGAGGAGCCAAGCAGCAGAATGGCTGCGTCGGATGGACCATGGAGCCTCGGAATCACTCTCCAAAGAGCCGTCGGAAGAAGGATTCTGCCTCGCCCTTCGCAACGGTCTAATTCTTTGCAATGTTCTCAATAAAGTCAATCCCGGAGCAGTCTACAAGGTGGTGGAGAATCCAGTGATAGCTGTTCAATCAACTGAGGGAGCAGCTCAATCTGCCATTCAGTATTTTGAGAACATGAAGAACTTCTTGGATGCTGTCAAGGACATGAAGCTCTTGACATTTGAAGCATCTGATTTGGAGAAGGGAGGTTCTTCGAATAAAGTTGTGGATTGCATTCTCTGCCTAAAAGGGTATTACGAGTGGAAACAAGCAGGCGGCATTGGGGTTTGGAGGTATGGAGGGACGGTCAGGATCGTGTCCTTCCCAAAGGAATTGCCCTCCTCCTTGATCGGAAGTGATAGTGCAGATGAGTCGATCAATGAATCCGAATCATCACGATATGAGCAGCTTTTACAGTTTCTCAATTATTCCAACGAGGTTTCAGACGAAGAATTGAGAATTGCCAATACTATGGCCTTTCTTTTTGATCATTTTGGACTTAGACTTCTGCAGGCCTACCTCCAAGAGAGTCATGGATATGAAGACTTGCCTCTGAGTACAATGACTATCGATATGTTGTTGAGTAAGGTTGTCAAGGATTTATCTGCCCTGCTGGTTTCTCAAGGGACTCAGCTTGGACTTTTTCTGAAGAGAATATTGAAAAGTGATGCTGGATTTCTATCGAAATCTGAATTTATGGAAATCATTGGTCAATATATTGCGAACAGAAGGAGCCTCGTATCGAATGATTTCTCTAAATTCTGTATATGTGGGGGTAAACTTGAGGTTGTTCAGCAAAAAGATAGTGTTTCAGATGGCTATGGAGAATTGATGGACATTCAGCAGAGACAGCTCCAGATGTTGAAATCATCATTTCAAGAATCAAAACTAGAAATCAAGCAGATTCACGCGAGTTGGGAGGAAGAACTAAGAAGGCTAGATCATCATCTCAAATCGCTGGAACAAACTTCCTCCTCCTATGAGAGAGTCCTGGAAGAAAATCGGCAGCTTTACAATCAAGTCCAAGATCTTAAAGGTACCATCAGGGTCTATTGCAGAGTGAGGCCATTTTTACCAGAGCAATCAAATGTGCAGTCTACTGTGGACTATATTGGAGAAAATGGAAATATTATGATTGTAAATCCACTGAAGCAGGGCAAAGATGCAAGAAGAGTGTTTTGCTTCAATAAAGTATTTGGAACAAATGTCACACAAGAGCAAATATACGATGACACTCAATCATTGATTAGATCCGTTTTGGATGGATTTAATGTATGCATATTTGCGTATGGACAAACCGGCTCTGGAAAGACTTATACAATGAGTGGCCCCGATCTTATGACCGAACAAACATGGGGCGTAAACTATAGAGCTCTCCGCGACTTATTTGAGATATCCAAGACAAGGGTGAACATGATAAAATATGAAGTTGGCGTTCAAATGATTGAAATTTATAATGAACAAGTGAGGGATCTTCTAGTCAGCGATGGCTCCAACAAAAGATATCCTTTAAGTGGACTTAATGTCCCAAATGCAAGCTGGGTTCCAGTCACTTGTACTCAAGATGTTCTTGATTTGATGAAGATCGGCCATGGCAATCGTGCTGTAGGTGCTACTGCTCTAAACGAGCGAAGCAGCCGGTCTCATAGTGTTTTAACAGTTCATGTTCTTGGGAAAGAGTTGGTCTCTGGATCCATTCTGAGAGGCTGTCTCCATCTGGTGGACTTGGCTGGAAGTGAGAGAGTGGATAAATCTGAGGCTGTGGGAGAGAGACTGAAGGAAGCTCAACATATAAATAGATCTCTCTCTGCACTTGGAGATGTCATTTCAGCTCTAGCGCAAAAAAGCGCTCATATTCCTTACCGAAACAGCAAGCTTACTCAGTTACTGCAAGATTCGTTAGGAGGGCAAGCCAAAACATTGATGTTTGTCCACATAAATCCCGACGTGAATGCGCTCGGGGAGACTGTGAGCACGCTCAAGTTTGCTGAGAGAGTTGCATCCATAGAACTAGGCGCTGCTCGATCGAATAAAGAAAATGGTGAAATCAGAGAATTAAAGGAGGAGCTATCAAGCCTTAAGTCAGTATTGGAGAAAAAAGAAGCAGAAATCGAGAGATTGAAGAGCGCAAATGCTCAAACAATTGTAGAAACTCAAAAGACAAGGCCTGTTTCTCCCTTCCGAATGCCAAGATGTGGTATTTCTGCCAGTTTGAGGCCTGGAAGTGGTCAAGTTGCTGAACCTAGAAGCTCAGAGGCCAGAAGCTGTTCTTCAGGTAAGCAAAGAAGGTCAAGATTTCCCTCTGTGCTTACAGAGAAGGAGATCATTCCAAAGATTCATCTGCCATCTGAACAGAAATCAGACAGCTCGGGAAAAACGAGCTCGCCATCTCCACCGATTAGAAGATCACTATCAACAGACAGAGGCAGCATCATTAAAAGCAAGATTAAGAATAATGGAGCTATTGAGAATCAACCAATATTGAAGTTTCCTTTTCCGTCGAGAATTCCTATGAACAAATCTGTCTCTACAACGGCAATACCTTCGATCGAGAAGAATGGAACAAACCACAAAGTTTCTGATGCGTTCTTGATCGTGCAAGAAGTGGCTAGTTTGGAAAAAGTTTACTCAGAGCAAGAAGAGGAGAATTTTATACAAGCTCTCAATGGAAGGCAAGGTGGAATTAGGAAGAGCAGAATTGAGGAGGGTAAGTCTAAAGCCAAACAGCATCAACTTCCAGTAGCTCGGATTCAGAATATTGGCAAAGTCACGACATTGCTAGCTGATATAAACTTCCATGAGAAGGCTCAAAAGAACGAGTTCTCCGAGAGGGAAAATGATCATCTAATAGGATCTCAATCTTCCGGTAGAGACAATTCCGGCAAGCAAAACCGACAGAACTTCTCAAGAAACTCTCAAAATGTGGAACCAAGGGGAGCATCACCTGCAGTAGAATCCATGATGGCTGGGAAGCTTGAGAACAAGCTATCAAATGGCATAATTCGCCATACGAAGGAAGCTAACAGCACAACTACTGTTACCAATTCAAGATGGAGCCGAACTTCACCTCGCAGAAAATATTTTGTTTTGCCTTGA 3354 43.11 MPQESYSGSIFTSPGKNLRGLKALVCNNNEASFTDEIINDDELAQRKAEEAASRRSQAAEWLRRMDHGASESLSKEPSEEGFCLALRNGLILCNVLNKVNPGAVYKVVENPVIAVQSTEGAAQSAIQYFENMKNFLDAVKDMKLLTFEASDLEKGGSSNKVVDCILCLKGYYEWKQAGGIGVWRYGGTVRIVSFPKELPSSLIGSDSADESINESESSRYEQLLQFLNYSNEVSDEELRIANTMAFLFDHFGLRLLQAYLQESHGYEDLPLSTMTIDMLLSKVVKDLSALLVSQGTQLGLFLKRILKSDAGFLSKSEFMEIIGQYIANRRSLVSNDFSKFCICGGKLEVVQQKDSVSDGYGELMDIQQRQLQMLKSSFQESKLEIKQIHASWEEELRRLDHHLKSLEQTSSSYERVLEENRQLYNQVQDLKGTIRVYCRVRPFLPEQSNVQSTVDYIGENGNIMIVNPLKQGKDARRVFCFNKVFGTNVTQEQIYDDTQSLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLMTEQTWGVNYRALRDLFEISKTRVNMIKYEVGVQMIEIYNEQVRDLLVSDGSNKRYPLSGLNVPNASWVPVTCTQDVLDLMKIGHGNRAVGATALNERSSRSHSVLTVHVLGKELVSGSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQLLQDSLGGQAKTLMFVHINPDVNALGETVSTLKFAERVASIELGAARSNKENGEIRELKEELSSLKSVLEKKEAEIERLKSANAQTIVETQKTRPVSPFRMPRCGISASLRPGSGQVAEPRSSEARSCSSGKQRRSRFPSVLTEKEIIPKIHLPSEQKSDSSGKTSSPSPPIRRSLSTDRGSIIKSKIKNNGAIENQPILKFPFPSRIPMNKSVSTTAIPSIEKNGTNHKVSDAFLIVQEVASLEKVYSEQEEENFIQALNGRQGGIRKSRIEEGKSKAKQHQLPVARIQNIGKVTTLLADINFHEKAQKNEFSERENDHLIGSQSSGRDNSGKQNRQNFSRNSQNVEPRGASPAVESMMAGKLENKLSNGIIRHTKEANSTTTVTNSRWSRTSPRRKYFVLP 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4582905 4589036 - Bpe003968.1 Bpe11g00603 110748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00603 1117 MobiDBLite consensus disorder prediction 834 851 - -
Bpe11g00603 1117 SMART kinesin_4 431 763 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe11g00603 1117 ProSiteProfiles Kinesin motor domain profile. 433 755 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe11g00603 1117 Coils Coil 762 803 - -
Bpe11g00603 1117 Coils Coil 389 433 - -
Bpe11g00603 1117 Gene3D Kinesin motor domain 376 757 IPR036961 -
Bpe11g00603 1117 SUPERFAMILY Calponin-homology domain, CH-domain 49 194 IPR036872 -
Bpe11g00603 1117 MobiDBLite consensus disorder prediction 1024 1068 - -
Bpe11g00603 1117 MobiDBLite consensus disorder prediction 804 904 - -
Bpe11g00603 1117 PANTHER KINESIN-LIKE PROTEIN KLP-3 24 1110 - -
Bpe11g00603 1117 PRINTS Kinesin heavy chain signature 705 726 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe11g00603 1117 PRINTS Kinesin heavy chain signature 508 529 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe11g00603 1117 PRINTS Kinesin heavy chain signature 656 674 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe11g00603 1117 PRINTS Kinesin heavy chain signature 625 642 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe11g00603 1117 ProSiteProfiles Calponin homology (CH) domain profile. 52 173 IPR001715 GO:0005515
Bpe11g00603 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 791 IPR027417 -
Bpe11g00603 1117 MobiDBLite consensus disorder prediction 869 904 - -
Bpe11g00603 1117 Gene3D - 44 173 IPR036872 -
Bpe11g00603 1117 MobiDBLite consensus disorder prediction 1087 1108 - -
Bpe11g00603 1117 SMART ch_5 54 171 IPR001715 GO:0005515
Bpe11g00603 1117 MobiDBLite consensus disorder prediction 1038 1065 - -
Bpe11g00603 1117 Pfam Kinesin motor domain 439 755 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe11g00603 1117 Pfam Calponin homology (CH) domain 54 173 IPR001715 GO:0005515
Bpe11g00603 1117 MobiDBLite consensus disorder prediction 1084 1110 - -
Bpe11g00603 1117 PANTHER KINESIN-LIKE PROTEIN KIN-14F 24 1110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00603 K10406 KIFC2_3; kinesin family member C2/C3 - qsu:111992149 1519.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00107 Bpe11g00603 CCT
Bpe05g00646 Bpe11g00603 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00646 Bpe-Chr5:20266918 Bpe11g00603 Bpe-Chr11:4582905 5.05E-176 dispersed
Bpe11g00603 Bpe-Chr11:4582905 Bpe13g00050 Bpe-Chr13:1421805 6.52E-175 dispersed
Bpe11g00603 Bpe-Chr11:4582905 Bpe03g00474 Bpe-Chr3:24269260 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00603 Bpe_Chr11 FPKM 1.233728 1.922274 0.0 0.258107 1.106094 0.995003 0.824508 0.0 0.356004 0.188636