Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00604 GTTTTATTAACTATCTTATTGTGTAGGTTTCAGCTCATGGATTCATCTTCAGTGGTGGATTTACTAGAGGCCTCCTCAGGGGTGCATTTTTCTGGACTGCACTTGAATAATTTGAAGCAACTTAATGAACTGGAGGAGCAACTTTCAGTTTCAGCGACTGAAAACATAGATCACCAGCCTTTTGTAATTGGAGTTGCTGGGGGAGCCGCCTCTGGTAAGACTACTGTTTGTGATATGATTATTCAGCAGCTTCATGATCAGCGTGTAGTTCTGGTTAATCAGGACTCTTTCTACCATAATTTAACTCCTGATGAGCTCACAAGAGTAAACGAGTACAACTTTGACCATCTTGATGCGTTTGACACCGAACAGCTTTTAAGTTCTATGGAGAAGCTAACGCATGGCCAGGCTGTGAACATTCCAGAGTATGATTTCAAGAGTTACAAAAATGATGTGTTTCCACCGAGAAGGGTTAACCCTTCAGATGTCATCATTTTGGTAGGAATACTTGTGTTTCATGACCCCCGTATTCGAGAGTTGATGAACATGAAAATATTTGTTGATACAGATGCTGATGTTCGTCTAGCAAGGAGGATAAGGCGTGATACTGTTGAGAAGAGTAGAGATATTGCTGCTGTTCTCGATCAGTATGCAAAATTTGTAAAGCCAGCATTTGATGACTTCATCCTTCCGACAAAGAAATATGCTGATGTCATCATTCCCAGAGGAGGAGATAATCCTGTTGCTATTGATTTAATTGTACAGCATATTCGAACGAAACTCGGTCAACATGATCTCTGTAAAATATACCCTAACTTATATGTCATTCATTCAACTTTTCAGATAAGAGGAATGCATACCCTAATACGGGATGCTAAAACAACAAAGCATGATTTTGTCTTTTACTCAGACAGATTGATCCGTCTGGTTGTTGAGCATGGTCTGGGACACCTGCCGTTCACAGAAAAGCAGGTGCTTACCCCTACTGACTCTGTGTATACCGGCGTGGATTTCTCTAAGAGGTTATGTGGTGTCTCTGTCGTCAGGAGTGGTGAAAGTATGGAGAATGCTTTACGAGCGTGTTGTAAAGGCATCAAGATTGGCAAGATTCTTATTCACAGGGAAGGTGATAACGGCCAGCAGCTAATTTATGAAAAATTGCCTCAAGACATCTCAGATAGGCATGTGTTACTATTGGATCCAATCCTTGGCACAGGTAATTCGGCCGTCCAAGCAATTTCCCTACTCGTAAGAAAGGGTGTGCCTGAGTCCAACATTATATTTCTGAATCTTATTTCAGCTCCCCAAGGTGTTCGTGTGGTGTGCAAAAGCTTTCCAAGAATAAAGATAGTGACATCTGAGATCGAAGTTGGCCTGAATGACGATTTCCGTGTCATCCCTGGCATGGGTGAGTTTGGAGATCGGTATTTTGGCACAGATGACGACGACCAAGAAATCTCACCTCCCTTTCAATAA 1476 41.94 VLLTILLCRFQLMDSSSVVDLLEASSGVHFSGLHLNNLKQLNELEEQLSVSATENIDHQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTPDELTRVNEYNFDHLDAFDTEQLLSSMEKLTHGQAVNIPEYDFKSYKNDVFPPRRVNPSDVIILVGILVFHDPRIRELMNMKIFVDTDADVRLARRIRRDTVEKSRDIAAVLDQYAKFVKPAFDDFILPTKKYADVIIPRGGDNPVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDAKTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVLTPTDSVYTGVDFSKRLCGVSVVRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPQDISDRHVLLLDPILGTGNSAVQAISLLVRKGVPESNIIFLNLISAPQGVRVVCKSFPRIKIVTSEIEVGLNDDFRVIPGMGEFGDRYFGTDDDDQEISPPFQ 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4593402 4599396 + Bpe003969.1 Bpe11g00604 110749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00604 491 PRINTS Uridine kinase signature 228 241 - -
Bpe11g00604 491 PRINTS Uridine kinase signature 135 150 - -
Bpe11g00604 491 PRINTS Uridine kinase signature 192 202 - -
Bpe11g00604 491 PRINTS Uridine kinase signature 90 101 - -
Bpe11g00604 491 PRINTS Uridine kinase signature 60 77 - -
Bpe11g00604 491 PRINTS Uridine kinase signature 206 217 - -
Bpe11g00604 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 253 IPR027417 -
Bpe11g00604 491 Pfam Uracil phosphoribosyltransferase 278 479 - -
Bpe11g00604 491 PANTHER URIDINE KINASE-LIKE PROTEIN 3 29 481 - -
Bpe11g00604 491 TIGRFAM udk: uridine kinase 60 260 IPR000764 -
Bpe11g00604 491 CDD UMPK 62 260 IPR000764 -
Bpe11g00604 491 Gene3D - 264 479 IPR029057 -
Bpe11g00604 491 PANTHER URIDINE KINASE 29 481 - -
Bpe11g00604 491 Gene3D - 56 263 IPR027417 -
Bpe11g00604 491 SUPERFAMILY PRTase-like 263 480 IPR029057 -
Bpe11g00604 491 Pfam Phosphoribulokinase / Uridine kinase family 62 248 IPR006083 GO:0005524|GO:0016301
Bpe11g00604 491 CDD PRTases_typeI 337 452 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00604 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - cit:102611190 830.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00604 Bpe-Chr11:4593402 Bpe14g00215 Bpe-Chr14:2387668 0 dispersed
Bpe11g00604 Bpe-Chr11:4593402 Bpe08g01082 Bpe-Chr8:12931670 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00584 CCT,ECH 33 188 PRT Gene Family AT1G80050 75.0 2.0e-64 241.9
Bpe07g00164 . 30 180 PRT Gene Family AT1G80050 75.5 8.6e-63 236.5
Bpe05g00590 . 30 180 PRT Gene Family AT1G80050 76.2 2.5e-62 235.0
Bpe05g00045 . 27 176 PRT Gene Family AT1G80050 69.3 2.0e-56 215.3
Bpe02g01252 CCT,ECH 33 158 PRT Gene Family AT1G80050 58.3 1.4e-44 176.0
Bpe14g00584 CCT,ECH 1 148 PRT Gene Family AT5G11160 85.1 4.6e-67 250.8
Bpe07g00164 . 8 145 PRT Gene Family AT5G11160 73.9 5.8e-54 207.2
Bpe05g00590 . 8 145 PRT Gene Family AT5G11160 72.5 3.8e-53 204.5
Bpe05g00045 . 5 142 PRT Gene Family AT5G11160 70.3 6.4e-53 203.8
Bpe02g01252 CCT,ECH 1 118 PRT Gene Family AT5G11160 62.8 8.7e-42 166.8
Bpe05g00045 . 4 179 PRT Gene Family AT1G27450 81.3 3.7e-78 287.7
Bpe07g00164 . 1 180 PRT Gene Family AT1G27450 75.0 3.8e-75 277.7
Bpe05g00590 . 7 181 PRT Gene Family AT1G27450 73.1 2.6e-71 265.0
Bpe14g00584 CCT,ECH 11 183 PRT Gene Family AT1G27450 71.7 4.1e-69 257.7
Bpe02g01252 CCT,ECH 11 153 PRT Gene Family AT1G27450 54.3 1.1e-45 179.9
Bpe05g00303 . 80 558 PRT Gene Family AT2G16570 85.0 2.2e-238 821.6
Bpe05g00303 . 80 558 PRT Gene Family AT4G34740 85.4 5.7e-239 823.5
Bpe05g00303 . 80 531 PRT Gene Family AT4G38880 75.1 2.4e-194 675.2
Bpe05g00045 . 4 179 PRT Gene Family AT1G27450 81.3 3.7e-78 287.7
Bpe07g00164 . 1 180 PRT Gene Family AT1G27450 75.0 3.8e-75 277.7
Bpe05g00590 . 7 181 PRT Gene Family AT1G27450 73.1 2.6e-71 265.0
Bpe14g00584 CCT,ECH 11 183 PRT Gene Family AT1G27450 71.7 4.1e-69 257.7
Bpe02g01252 CCT,ECH 11 153 PRT Gene Family AT1G27450 54.3 1.1e-45 179.9
Bpe14g00584 CCT,ECH 33 188 PRT Gene Family AT1G80050 75.0 2.0e-64 241.9
Bpe07g00164 . 30 180 PRT Gene Family AT1G80050 75.5 8.6e-63 236.5
Bpe05g00590 . 30 180 PRT Gene Family AT1G80050 76.2 2.5e-62 235.0
Bpe05g00045 . 27 176 PRT Gene Family AT1G80050 69.3 2.0e-56 215.3
Bpe02g01252 CCT,ECH 33 158 PRT Gene Family AT1G80050 58.3 1.4e-44 176.0
Bpe07g00164 . 1 97 PRT Gene Family AT4G22570 83.7 1.3e-43 172.2
Bpe05g00590 . 5 97 PRT Gene Family AT4G22570 81.7 5.5e-42 166.8
Bpe05g00045 . 4 94 PRT Gene Family AT4G22570 79.1 5.3e-37 150.2
Bpe07g00164 . 1 96 PRT Gene Family AT4G12440 83.3 3.3e-41 164.1
Bpe05g00590 . 1 96 PRT Gene Family AT4G12440 80.2 3.0e-39 157.5
Bpe14g00584 CCT,ECH 1 148 PRT Gene Family AT5G11160 85.1 4.6e-67 250.8
Bpe07g00164 . 8 145 PRT Gene Family AT5G11160 73.9 5.8e-54 207.2
Bpe05g00590 . 8 145 PRT Gene Family AT5G11160 72.5 3.8e-53 204.5
Bpe05g00045 . 5 142 PRT Gene Family AT5G11160 70.3 6.4e-53 203.8
Bpe02g01252 CCT,ECH 1 118 PRT Gene Family AT5G11160 62.8 8.7e-42 166.8
Bpe02g01097 . 1 186 PRT Gene Family AT1G71750 60.4 1.5e-61 232.6
Bpe11g00604 . 28 482 PRT Gene Family AT1G55810 83.1 3.7e-220 760.8
Bpe08g01082 . 739 1125 PRT Gene Family AT1G55810 83.7 8.8e-190 659.8
Bpe14g00215 . 19 525 PRT Gene Family AT1G55810 66.3 1.7e-188 655.6
Bpe11g00604 . 79 487 PRT Gene Family AT3G27440 74.1 5.5e-178 620.5
Bpe14g00215 . 81 525 PRT Gene Family AT3G27440 68.1 1.1e-170 596.3
Bpe08g01082 . 739 1125 PRT Gene Family AT3G27440 72.6 1.2e-164 576.2
Bpe14g00215 . 1 525 PRT Gene Family AT3G27190 78.5 1.4e-233 805.4
Bpe11g00604 . 14 481 PRT Gene Family AT3G27190 73.1 9.7e-203 703.0
Bpe08g01082 . 739 1125 PRT Gene Family AT3G27190 77.3 5.4e-177 617.5
Bpe03g01028 . 1 239 PRT Gene Family AT3G53900 73.3 4.2e-100 361.3
Bpe11g00604 . 13 482 PRT Gene Family AT4G26510 82.7 2.9e-228 787.7
Bpe14g00215 . 11 525 PRT Gene Family AT4G26510 69.5 1.4e-201 699.1
Bpe08g01082 . 739 1125 PRT Gene Family AT4G26510 84.2 1.3e-191 666.0
Bpe14g00215 . 1 525 PRT Gene Family AT5G40870 79.8 1.4e-238 822.0
Bpe11g00604 . 14 484 PRT Gene Family AT5G40870 73.1 1.2e-203 706.1
Bpe08g01082 . 739 1125 PRT Gene Family AT5G40870 76.7 4.6e-176 614.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00604 Bpe_Chr11 FPKM 24.097124 26.041443 23.231052 23.584528 23.912661 23.671408 24.07074 34.57655 35.308788 33.377956