Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00613 ATGTCCCATTATCAGGGGGATAATTCTGATTACATGGCTGATGAGTATGAAAAGGAAGTCGGAGACGATGATATGGATGATGAGTTTCATGAAATAGAAATGGATGGGTCAGAGTCTGATGTCGATGATTTTGACTCGAGTAGCAGAGTCGTTGATACCACTTCGGCTCAAGCAAGAAGAGGAAAAGATATCCAGGGAATTCCTTGGGACAGGCTGAGTATTACTAGGGAAACGTACAGGCAGACTAGGTTAGAGCAGTACAAGAACTACGAAAATGTTCCTAATTCTGGAGATGGGTCGGGGAAGGACTGCATTAATACAAAGAAAGGCTGTATGTATTACGAGTTTCGGCGAAACTCAAGATCAGTGAAATCAACCATTCTTCACTTTCAGATGTTACAGTTAAGGAACTTGGTATGGTCTACATCAAAACATGACGTATACCTCATGTCACATTTTTCAGTGATTCATTGGTCTTCTCTAACTTGCACGAAGTCTGAAGTTCTCAATGTTTCTGGACACGTGGCACCAACTGAGAAACATCCTGGAAATCTATTGGAAGGATTTACCCAAACCCAAGTCAGTACTCTTGCTGTAAAAGATAAGCTATTAGTTGGTGGAGGATTCCAGGGAGAGCTTATTTGCAAGAGACTAGATAGACAAGGCGTTAGTTTTTGTTCCAGAACAACTTACGATGATAATGCCATCACCAATGCTATTGAAATTTACGGCAGTTCGAGTGGTGCAGTTCACTTCACAGCCTCAAATAATGATTGTGGAGTTAGAGACTTTGATATAGAGAAGTTTCAGCTCACTAAGCATTTTGGTTTTCCTTGGCCTGTGAATCACACTTCTCTGAGTCCAGATGGTAAACTAATTGTGATTGTGGGTGACAACCCTGATGGTTTATTGGTGGACTCTCAAACTGGGAAGACGGTCACACCTTTATGTGGGCACTTAGACTTTTCATTTGCATCGGCCTGGCATCCCGACGGTGTCACCTTTGCTACCGGAAACCAGGACAAAACCTGCCGGATTTGGGACGTAAGAAATCTATCCAAGTCAGTTGCTGCTCTGAAGGGGAATATCGGAGCTACAAGATCGATAAGGTATAGTTCTGATGGTAAATATATGGCAATGGCAGAGCCCGCGGACTTTGTGCATGTGTATGACGTGAGCAAGGGTTATGCAAGAGAGCAAGAAATTGATTTTTTTGGCGAGATTTCGGGCATATCTTTCAGTCCCGACACTGAATCGCTTTTTATTGGTGTGTGGGATCGTACTTATGGTAGCCTCCTCGAGTATGGACGACATCGTAATTACTTGTACCTTGACGCACTTTTTTGA 1347 42.91 MSHYQGDNSDYMADEYEKEVGDDDMDDEFHEIEMDGSESDVDDFDSSSRVVDTTSAQARRGKDIQGIPWDRLSITRETYRQTRLEQYKNYENVPNSGDGSGKDCINTKKGCMYYEFRRNSRSVKSTILHFQMLQLRNLVWSTSKHDVYLMSHFSVIHWSSLTCTKSEVLNVSGHVAPTEKHPGNLLEGFTQTQVSTLAVKDKLLVGGGFQGELICKRLDRQGVSFCSRTTYDDNAITNAIEIYGSSSGAVHFTASNNDCGVRDFDIEKFQLTKHFGFPWPVNHTSLSPDGKLIVIVGDNPDGLLVDSQTGKTVTPLCGHLDFSFASAWHPDGVTFATGNQDKTCRIWDVRNLSKSVAALKGNIGATRSIRYSSDGKYMAMAEPADFVHVYDVSKGYAREQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRHRNYLYLDALF 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4663659 4666232 + Bpe003978.1 Bpe11g00613 110758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00613 448 Pfam WD domain, G-beta repeat 311 348 IPR001680 GO:0005515
Bpe11g00613 448 Gene3D - 227 444 IPR015943 GO:0005515
Bpe11g00613 448 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 448 - -
Bpe11g00613 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 351 - -
Bpe11g00613 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 357 IPR001680 GO:0005515
Bpe11g00613 448 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 1 448 - -
Bpe11g00613 448 MobiDBLite consensus disorder prediction 34 57 - -
Bpe11g00613 448 SMART WD40_4 352 391 IPR001680 GO:0005515
Bpe11g00613 448 SMART WD40_4 309 348 IPR001680 GO:0005515
Bpe11g00613 448 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 191 428 IPR011047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00613 - - - jre:108985970 765.763
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00454 Bpe-Chr4:2905584 Bpe11g00613 Bpe-Chr11:4663659 4.69E-170 dispersed
Bpe04g00995 Bpe-Chr4:6942577 Bpe11g00613 Bpe-Chr11:4663659 0 dispersed
Bpe11g00613 Bpe-Chr11:4663659 Bpe06g00115 Bpe-Chr6:1804140 9.24E-12 dispersed
Bpe11g00613 Bpe-Chr11:4663659 Bpe05g01094 Bpe-Chr5:23370306 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g783 Blo03g00480 Blo03g01493 Bda07g00435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1270 Cone15ag1296 . . . . . . . . Bpe11g00613 . . Bma14g00658 . . Cmo09g00636 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00613 Bpe_Chr11 FPKM 2.788297 3.345587 7.259617 8.13564 7.002259 8.09971 7.05411 18.234432 18.954165 17.160095