Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00642 ATGGAGGACAATGTGGTTGACAATTTAACCCCGATGGACACTGTGGACAGTGGACATATCCTAAACAAAGGTAGGCCAGAGGCGCCATTGGAGAGCATGTATGCGCAAAAACCTGAAGCCTGTAACATTTTGGGATCTCAAGAAATGCTTATACCTGTCGAAGGTGGGAATTTTCCTCGTGAATTAGATGGTTTCTTGGATGGTAAGACCGTGATTAGGAGTGATAACCATGTGGATGCATCAGAACACTCATTTTCCATCCCCCGCTGCATGGATGAGGCTGGTGTTATGGTTGAAGAATTAACTGTAAAAAATTATGATGGTTCAAATTTAGCTATTGTTGGCACATCAAATAATAGGGGGAGAATGCTTACTAGGCAGAACCAGTGGCAACAGCTATATCAGCTAGGAAATGGATCGGGAAGTGGGTGTACTCACAATGAGACTCCATACAAGGACACTGGTCAGGTGATGTCAAGTGGTTTGGAGGATGTTGGATACTCGACTTTTCCTGAATTTTTGGCTCAAAAAACAATTACTGACAGTTGTGGTGAGGACCTTGAAGAATTTATAAATACTGAAAATAAAGTGGTTTCAGGGAACACTCATGGTGCTGTGCGAACTAAGATTATATCGAAATCAGGTTTCTCTGAGTTTTTTGTCAAGAAGACACTAAAGGGTAAGGGCATCATGGAAAGGGGCCCGCTTCATTCAGGTTTCAATGTTGAGCCTAGAAACAAGAAAAGTCCAAAGTCTACGTCATTACAGCCTAATTTTAAAAATGTCACACCCTCTCCATGTGTGAAATCTGAGCCAAAAGTCTGTAGCTCTGCTATTGGAGTTAGTCTGCAAGAATGGCTAAAAGTTGGCCATAAAAAGGTGACTAAACTCGAGCGCTTGAATATATTTAAGCAGATTTTAGAACTGCTGGATCATGCTCACTCTCAAAGAATTGTTTGGCATGACATACGGCCATCTTCCTTCAGGCTATTAGCTTCAAATCAGGTCAAGTATAATGGGGCGGCTATCCAAGAAGAGACGAGAGAAACTTCAATGGATGGAGATTTTCAGTACTTGGGGAAGAGTTTGATAAAGAAAAGACTATTAGAGCAGGGAGCATTCCCTTCATTACATGAAACTTTAAGAAAGAAAAAGTTCATTCAGAATACAGACTATTTGGAAAAGCTACCACAAACTAATTTGACACCTGGCATTGGACTTGAAATTGGAAATTCTTCTAGCCAATTGGGTACTCGCGGGAATCAAAGCAAGTATACTGGACTTTGTTCCATTAATTCTGGTCATCTGAATCTAGCTAGTGAGCACTTGGAAGAAAACTATTATGTAAGTCCTGAGGAACTCAATGGTCAAGGGATAACAACTTCTTCAAATATATACTCTCTGGGTGTCCTCTTTTTTGAGCTGCTGGGCGATTTTGATTTTGATGGTACACGTGTTGCTGCATTGTCTGATTTACGTCATAGGATTCTCCCTCCAAAATTTTTGTCAGAAAATCCACGGGAAGCTGGATTTTGCCTTTGGCTGCTTCATCCTGAACCTGCATCTCGACCCTCAACGCGGAAAATTTTAGAATATGAAGTAATGATATTATCTCCACCAGCATCTACAGAAGAATTGTCATCGTCCCCTGATCAAGATGGTACAGAATCTGAATTATTGTTGCAATTTCTCGTTTCTTTACAAGAACAGAAGCAGAAGCGTGCAGCAAAGTTAGTGGAAGACAATCAGAGCTTAGAAGCAGACATAGAAGAAATTGAAAGAAGGCACAGTTCGAACAAATCCTTGGTTCATTCACTTACGGACTCCTTTAATGAAATGGAGAAATGTATTGTTCCGAAAGCAAATTCAAGCTTTGATATGGTTTCTCAGCTGTCTGTTTTTCCTAATACGACTGAGATGAAGTTTGAAAAGAATATCTTCCAGCTTGAAACTGCATACTTCTCAACGAGATCCAAAGTTCAGCTTCCTGAGAATGATTCAGTAGTACGAACAGACATTGATTTGTTGAGAACTCGGGAGAACTGCAATCGGGCATGGCAAAGTGAAGAGAAAACACGACCTGTGGATTACTTGGGAGATTTTTTTGATGGATTTTGCAAGTATTCTCGCTATAGTAAATTTGAAGTGCGTGGAACATTAAGAAATTCAGATTTCAATAGCTCTTCCAATGTGATTTGTTCATTGAGTTTTGATCGTGACGGGGACTACTTTGCGGCTGCAGGAGTGTCGAAGAAAATAAAAATATTTGGCTTTAATGCAGTCTTTAATAACTTGGTTGATATTCATTATCCAGCTGTTGAGATGATGAACAAATCAAAGCTCAGCTGCGTTTGCTGGAATAGCTATATTAAGAACTATCTGGCTTCAACTGATTATGATGGTGCAGTCAAGTTATGGGATGCATCCACAGGGCAAGAGACTTCTCAATACAAGGAACATGAAAGGAGGGCCTGGTCTGTCGACTTTTCTCAAAAAAATTCTTTAGGCACAATCAGGAACATTGCAAATGTATGCTGTGTTCAGTTCTCTGCTCACTCTACTCATTTTCTGGCGTTTGGGTCTGCTGATTACCGAACCTATTGCTATGATCTTAGGAATACTAAAGCTCCATGGTGTATATTGGGTGGTCATGGCAAAGCTGTAAGCTATGTGAAATTCTTGGACTCTGAGACCCTTGTTTCTGCCTCTACTGACAGCACTCTGAAGCTATGGGATCTCAACCGAACAAATCCTTGTGGCTTGTCCACCAACGCCTGCAGTTCAACTTTCAGCGGGCACACTAATGAGAAGAACTTTGTGGGTTTGTCCGTTTCTGATGGTTATATCGCTTGCGGATCTGAGACAAATGAGGTATGCGCTTACTATCGATCTCTTCCCATGCCAATCACCTCCCTCAAGTTTGGCTCGATAGACCCAGTTTGTGGGAAGGAGACTGATGATGACAACGGACAGTTTGTTTCCAGCGTTTGCTGGAGAGGAAAATCTGACATGCTCATCGCAGCGAATTCAAGTGGCTGTATAAAAGTGTTGCAAATGGTTTGA 3063 41.2 MEDNVVDNLTPMDTVDSGHILNKGRPEAPLESMYAQKPEACNILGSQEMLIPVEGGNFPRELDGFLDGKTVIRSDNHVDASEHSFSIPRCMDEAGVMVEELTVKNYDGSNLAIVGTSNNRGRMLTRQNQWQQLYQLGNGSGSGCTHNETPYKDTGQVMSSGLEDVGYSTFPEFLAQKTITDSCGEDLEEFINTENKVVSGNTHGAVRTKIISKSGFSEFFVKKTLKGKGIMERGPLHSGFNVEPRNKKSPKSTSLQPNFKNVTPSPCVKSEPKVCSSAIGVSLQEWLKVGHKKVTKLERLNIFKQILELLDHAHSQRIVWHDIRPSSFRLLASNQVKYNGAAIQEETRETSMDGDFQYLGKSLIKKRLLEQGAFPSLHETLRKKKFIQNTDYLEKLPQTNLTPGIGLEIGNSSSQLGTRGNQSKYTGLCSINSGHLNLASEHLEENYYVSPEELNGQGITTSSNIYSLGVLFFELLGDFDFDGTRVAALSDLRHRILPPKFLSENPREAGFCLWLLHPEPASRPSTRKILEYEVMILSPPASTEELSSSPDQDGTESELLLQFLVSLQEQKQKRAAKLVEDNQSLEADIEEIERRHSSNKSLVHSLTDSFNEMEKCIVPKANSSFDMVSQLSVFPNTTEMKFEKNIFQLETAYFSTRSKVQLPENDSVVRTDIDLLRTRENCNRAWQSEEKTRPVDYLGDFFDGFCKYSRYSKFEVRGTLRNSDFNSSSNVICSLSFDRDGDYFAAAGVSKKIKIFGFNAVFNNLVDIHYPAVEMMNKSKLSCVCWNSYIKNYLASTDYDGAVKLWDASTGQETSQYKEHERRAWSVDFSQKNSLGTIRNIANVCCVQFSAHSTHFLAFGSADYRTYCYDLRNTKAPWCILGGHGKAVSYVKFLDSETLVSASTDSTLKLWDLNRTNPCGLSTNACSSTFSGHTNEKNFVGLSVSDGYIACGSETNEVCAYYRSLPMPITSLKFGSIDPVCGKETDDDNGQFVSSVCWRGKSDMLIAANSSGCIKVLQMV 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4947340 4953192 + Bpe004000.1 Bpe11g00642 110787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00642 1020 ProSitePatterns Trp-Asp (WD) repeats signature. 899 913 IPR019775 -
Bpe11g00642 1020 Pfam WD domain, G-beta repeat 880 912 IPR001680 GO:0005515
Bpe11g00642 1020 Pfam WD domain, G-beta repeat 728 756 IPR001680 GO:0005515
Bpe11g00642 1020 Gene3D - 834 1020 IPR015943 GO:0005515
Bpe11g00642 1020 Gene3D - 701 833 IPR015943 GO:0005515
Bpe11g00642 1020 SUPERFAMILY WD40 repeat-like 727 1017 IPR036322 GO:0005515
Bpe11g00642 1020 PANTHER PROTEIN SPA1-RELATED 2 1 1020 - -
Bpe11g00642 1020 PANTHER PROTEIN SPA1-RELATED 2 1 1020 IPR044630 GO:0009640
Bpe11g00642 1020 ProSiteProfiles Trp-Asp (WD) repeats profile. 881 914 IPR001680 GO:0005515
Bpe11g00642 1020 ProSitePatterns Trp-Asp (WD) repeats signature. 794 808 IPR019775 -
Bpe11g00642 1020 Gene3D Transferase(Phosphotransferase) domain 1 280 537 - -
Bpe11g00642 1020 Coils Coil 568 595 - -
Bpe11g00642 1020 ProSiteProfiles Protein kinase domain profile. 130 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g00642 1020 ProSiteProfiles Trp-Asp (WD) repeats profile. 774 816 IPR001680 GO:0005515
Bpe11g00642 1020 SMART WD40_4 978 1018 IPR001680 GO:0005515
Bpe11g00642 1020 SMART WD40_4 923 962 IPR001680 GO:0005515
Bpe11g00642 1020 SMART WD40_4 831 870 IPR001680 GO:0005515
Bpe11g00642 1020 SMART WD40_4 874 912 IPR001680 GO:0005515
Bpe11g00642 1020 SMART WD40_4 713 757 IPR001680 GO:0005515
Bpe11g00642 1020 SMART WD40_4 768 807 IPR001680 GO:0005515
Bpe11g00642 1020 SMART serkin_6 130 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g00642 1020 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 881 914 - -
Bpe11g00642 1020 MobiDBLite consensus disorder prediction 234 264 - -
Bpe11g00642 1020 MobiDBLite consensus disorder prediction 245 264 - -
Bpe11g00642 1020 SUPERFAMILY Protein kinase-like (PK-like) 280 533 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00642 K16240 SPA1; protein suppressor of PHYA-105 1 - csv:101211350 1154.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01023 Bpe-Chr8:12483240 Bpe11g00642 Bpe-Chr11:4947340 6.64E-154 dispersed
Bpe11g00483 Bpe-Chr11:3718950 Bpe11g00642 Bpe-Chr11:4947340 1.48E-136 dispersed
Bpe11g00642 Bpe-Chr11:4947340 Bpe11g01012 Bpe-Chr11:7510931 3.73E-89 dispersed
Bpe11g00642 Bpe-Chr11:4947340 Bpe09g00233 Bpe-Chr9:1684408 1.09E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00642 Bpe_Chr11 FPKM 26.690475 30.790667 128.520416 122.606972 31.027336 28.568958 23.796078 1.8335 0.979408 1.555392