Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00643 ATGGAACGATTCCGGCGCATCGGAGAGGTTCTGGGGAGCTTGAAGGCTCTAATGGTGCTGCAGGATGATATTCAGTTCAATCCGCGTCAATGTTGTCTGCTTCATGACATACTCAGTCTGGCCTTCGACACCATAGCAGAAGAGATCAGGAACAATCTCAAGTTAGAAGAAAAGAACACCAAATGGAAACCTCTTGAGCACCCATTGAAGGAACTTCACAGGGTCTTCAAAGAGGCCGAGCTTTACATCAGGCATTGCATGGATTCCAAGGACTGGTGGGCCAAACTCATCAACCTCCACCACAACAACGACTGCATCGAGTACCACATTCACAACTTGCTCTGCTACTTCCCGGCCATTATCGAGGCGATCGAGAATGCCGGGGAGATATCAGGGCTTGATCAAGATGAGATGCAAAAGAGGCATCTCGTGATATCAAGAAAGTATCACAACGAATGGAATGATCCGAAGCTTTTCCAATGGAGATTCGGGAAACAGTATTTGGTTCCTCGGGAAATCTGCGCTAGACTGGAGAGCTCTTGGAGAGAGGATAGGTGGCTGCTCATGGAGGAACTCAAGGAGAAGGCCAGCTCTGGGGGCTTCAACTCGAAGAATGAGCAGCGACTTGCACAGTCACTGCTGAAGATTCTGCACAGGTCAGAACCATTGAGCGAGAAGCTCCCTCCAGCTTCGATTCTGGTAGGAGCAAAGGATTACCAGGTGAGACGTCGTTTGGGAAGTGGAAGCCAGTTCAAGGAAATTCAGTGGTTGGGTGAAAGCTTTGCTCTCAGGCACTTCTGCGGACAAATTGAACCAGTAGATTCTGAAATCTCTCTTCTCCTCTCCCTCGCCCATCCTAACATATTGAAGTATCTGTGCGGCTTCTACGACGAAGAGAAGAAAGAGTGCTTTCTGGTGATGGAGTTGATGAACAAGGATCTCATGTCTTACATGAAGGAGAACTCCGGCCCAAGAAGGCAGGTTCTGTTCCCTCTTCCTGTCATTGTCGATCTCATGCTCCAAATCGCCAGAGGCATGGAATATCTACACTCCAAGAAGATCTACCATGGAGATTTGAATCCTGCTAACGTGCTGATGAAACCCAGAACTTCATCAGAAGGGTATTTTCAAACCAAGGTTTCTGGGTTTGGTTTGTTATCTGTCAAGAACCCTCCCACCAAAAACTCTTCCAACAGCCAGAACGATACCGACCCTTTCATTTGGTATGCCCCAGAAGTTCTTGCGGAGCAAGTTCAGGCGGGAGACATTTCTGCTTGCAAGCACACGGAAAAAGCGGATGTTTACAGCTTTGGGATGATTTGCTTCGAGCTGCTGACGGGGAAAGTAGCTTTTGGAGAAAGCCATTTGCAAGGAGAGAAGATGAGTTACAATATAAGATCAGGGGAGAGGCCTCTGTTTCCTCACCCTTGTCCGAAATACTTGGTAAACCTGACCAAAAGATGTTGGCAGACGGACCCATTACAGAGGCCGACATTTACTTCCATCGCTAGAATTCTGAGGCAAGTCAAGAAATTTCTTGCCATGGGCGATGAACTTTGTCAGCCAGAGCTGCAAGTGCCTGCAGTAGATTACTGTGACTTAGAGGCAGGTTTCTTGAAGAAGTTCTCCGCCAATGGGGTTTCTAATGTTACCTCAATATCACAAATTCCATTCCAAATGTTTGCTTACAGACTTGTAGAAAAAGAAAAAAGTTGCACGAGCAAGGACAAGATCGGGGATTCAGCCGGTGATGTAGTCTCAAATTGTAAGGATGACTGCGCATCCACTTGCAGGGATGACAATACTTCTGTGATTGAAGATCCATTTGTGCCTACAGACTTGAGGTCGGTTTGCTCCGATATTAGATCAGTCTACTCCGAGGCTCCATTCAAGAAGATTCTATCGCCAAAGCAAGGTCCGGGCATGAGGGGGATCAGAAAAGGGCCAGGGTCGGTGGATGAACAATCGTCAAAATCTTCTCGGCTAACTACACCAAGTCAGACTATAAGGACCAAGACGAATCAAGAGAGTCTCTCACCATTGCCTTTCCGGACGGGAATAAGCCGTCTGAGCCACGGTAGACGAAGAATGTGCGGCCATGTTTCAGATTCAGATTTACAT 2121 47.43 MERFRRIGEVLGSLKALMVLQDDIQFNPRQCCLLHDILSLAFDTIAEEIRNNLKLEEKNTKWKPLEHPLKELHRVFKEAELYIRHCMDSKDWWAKLINLHHNNDCIEYHIHNLLCYFPAIIEAIENAGEISGLDQDEMQKRHLVISRKYHNEWNDPKLFQWRFGKQYLVPREICARLESSWREDRWLLMEELKEKASSGGFNSKNEQRLAQSLLKILHRSEPLSEKLPPASILVGAKDYQVRRRLGSGSQFKEIQWLGESFALRHFCGQIEPVDSEISLLLSLAHPNILKYLCGFYDEEKKECFLVMELMNKDLMSYMKENSGPRRQVLFPLPVIVDLMLQIARGMEYLHSKKIYHGDLNPANVLMKPRTSSEGYFQTKVSGFGLLSVKNPPTKNSSNSQNDTDPFIWYAPEVLAEQVQAGDISACKHTEKADVYSFGMICFELLTGKVAFGESHLQGEKMSYNIRSGERPLFPHPCPKYLVNLTKRCWQTDPLQRPTFTSIARILRQVKKFLAMGDELCQPELQVPAVDYCDLEAGFLKKFSANGVSNVTSISQIPFQMFAYRLVEKEKSCTSKDKIGDSAGDVVSNCKDDCASTCRDDNTSVIEDPFVPTDLRSVCSDIRSVYSEAPFKKILSPKQGPGMRGIRKGPGSVDEQSSKSSRLTTPSQTIRTKTNQESLSPLPFRTGISRLSHGRRRMCGHVSDSDLH 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4953706 4955926 - Bpe024774 Bpe11g00643 110788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00643 707 Pfam Protein tyrosine and serine/threonine kinase 274 505 IPR001245 GO:0004672|GO:0006468
Bpe11g00643 707 SUPERFAMILY Protein kinase-like (PK-like) 228 509 IPR011009 -
Bpe11g00643 707 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 546 - -
Bpe11g00643 707 MobiDBLite consensus disorder prediction 652 684 - -
Bpe11g00643 707 Pfam Protein of unknown function (DUF1221) 21 235 IPR010632 -
Bpe11g00643 707 PANTHER SERINE-THREONINE PROTEIN KINASE 1 546 - -
Bpe11g00643 707 Gene3D Transferase(Phosphotransferase) domain 1 233 521 - -
Bpe11g00643 707 ProSiteProfiles Protein kinase domain profile. 239 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g00643 707 MobiDBLite consensus disorder prediction 635 686 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00643 - - - csv:101209943 926.006
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00643 Bpe-Chr11:4953706 Bpe15g00632 Bpe-Chr15:17134552 6.49E-27 dispersed
Bpe11g00643 Bpe-Chr11:4953706 Bpe08g00375 Bpe-Chr8:2291971 1.04E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g104 . . . . . . . Bma14g00625 . . Cma02g01397 Cma15g01268 Car02g01176 Car15g01143 . . Cpe05g00377 . . . . . . . . . . . . . . Cone8ag0256 . Cone6ag0836 . . Csa05g00217 Chy09g01282 . . Blo19g00360 . . . Bpe11g00643 . . . Cmo02g01432 Cmo15g01338 Cma06g01032 . . . . Cpe13g00120 Bhi12g00163 . . Lac11g2016 Hepe06g1491 . . Cla01g00200 Cam01g0206 Cec01g0200 Cco01g0205 Clacu01g0202 Cmu01g0198 Cre09g2309 Lsi09g00188 . . Cme09g01827
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007279 0 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63570 PF07714 PK_Tyr_Ser-Thr 2.70E-39 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00643 Bpe_Chr11 FPKM 1.730289 1.972907 2.952818 3.619493 5.003489 4.651851 5.907376 0.0 0.0 0.0