Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00644 ATGGATTCTGGTTTTGTTTCTTCTATCAAGTTCAGCGAGCACCGCAGCCACGTTAAGCTTGTTTCCACGCCGGAAATAAGGCCTAAACTGGTGAGGATAACAGTGACCGATGGAGACGCGACTGACTCATCCAGTGACGATGAAGATGTAGTGTTTCCTCGTCAAAGGCTCAAGAAGTTTGTGACTGACATTACAATGGAGTCGCCGTCTTGCTGCGAAAGAAATGTCAAGTGGAGGCAGAGCAAGGGTACCAAAACTTGCCGGAAAAGCTGCATCGAAAAAACAAGATCTCCTCCAGCGACCCAAAAGCCGTTGAAAGTTACCGGTGGTAAGAAGTTCCGAGGCGTGAGGCAGAGGCCGTGGGGAAAATGGGCCGCTGAAATCAGAGATCCTCTGCGACGGGTGCGTCTCTGGTTAGGTACTTACGACACTGCAGAAGAAGCAGCCATGGTCTACGATAGCGCAGCTATTAAGCTTCGTGGGCCTGATGCTTTGACTAATTTTGCTATCCAACCTCCCAAGTGCTTGGCTGCCGCCGAACCTGCTTCTTCGACCTCCGGCTACCATTCCGGCGAAGAATCAAATAATAATAATCTTTGCTCACCGACCTCTGTTCTACGATGTGCTTCACCTTCAAATGAAGAGGCTGACTCGGAAAGCCCCGCCTCTTCTGCCATTCTTAAGGAAAACTATGACGGCGGCGAGGTCGGAAGTGAATCCTGCGTCTCGGGAAAAATCTCCGAGTTTGAGACCTTCATCCCGAGCGATATATTCGACTTTGACTTCCCCATACCAAGCCTGTTTGAGGAAGCGAGTCTACAGGAGGCCGTCGTTTTAGGAGATGATTACAGTAACTTTTTCAGTTCGAACGACGAATTGGGGACTGGATTTTCAACGTGGGGAGTAGACGATGAGTTCCAGGACATCGGCGACATATTCGGGTTGGATCCTCTAATGGCGCTCTGA 966 50.0 MDSGFVSSIKFSEHRSHVKLVSTPEIRPKLVRITVTDGDATDSSSDDEDVVFPRQRLKKFVTDITMESPSCCERNVKWRQSKGTKTCRKSCIEKTRSPPATQKPLKVTGGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDSAAIKLRGPDALTNFAIQPPKCLAAAEPASSTSGYHSGEESNNNNLCSPTSVLRCASPSNEEADSESPASSAILKENYDGGEVGSESCVSGKISEFETFIPSDIFDFDFPIPSLFEEASLQEAVVLGDDYSNFFSSNDELGTGFSTWGVDDEFQDIGDIFGLDPLMAL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4960790 4961755 - Bpe004001.1 Bpe11g00644 110789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00644 321 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Bpe11g00644 321 PIRSF PTI6 210 306 IPR017392 GO:0003700
Bpe11g00644 321 PIRSF PTI6 4 225 IPR017392 GO:0003700
Bpe11g00644 321 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Bpe11g00644 321 Gene3D AP2/ERF domain 111 171 IPR036955 GO:0003700|GO:0006355
Bpe11g00644 321 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Bpe11g00644 321 CDD AP2 111 171 IPR001471 GO:0003700|GO:0006355
Bpe11g00644 321 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Bpe11g00644 321 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Bpe11g00644 321 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 317 - -
Bpe11g00644 321 SUPERFAMILY DNA-binding domain 112 170 IPR016177 GO:0003677
Bpe11g00644 321 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 6 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00245 Bpe-Chr3:3240249 Bpe11g00644 Bpe-Chr11:4960790 7.79E-70 dispersed
Bpe07g01005 Bpe-Chr7:15721497 Bpe11g00644 Bpe-Chr11:4960790 1.10E-48 dispersed
Bpe11g00644 Bpe-Chr11:4960790 Bpe12g00369 Bpe-Chr12:8949352 7.59E-61 dispersed
Bpe11g00644 Bpe-Chr11:4960790 Bpe05g00678 Bpe-Chr5:20437710 3.79E-92 wgd
Bpe11g00644 Bpe-Chr11:4960790 Bpe07g00080 Bpe-Chr7:593198 6.65E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22046 PF00847 AP2 5.40E-14 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00644 - - jre:108997304 293.508