Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00645 ATGGAAAAAAGGGAAGGGAAAAGTGGGGAGGTTGGAGGAGAGGAGGAGAATTTGGGAGAAAAGTTGAGGAGAGAGGTTGTGGTAGGGAAAAAAGGTGGACCTTGCACTCCAGTTCCCTCATGGAGGCTTTGGGCTCCAAAAGAATCAATCATTGATCAGAAGCCTTTCCCAAACTCTGTTTCTGCCAGAAAACTCGGCGCAGCTCTCTGGGAGTTTCAGCACTACCTCCCCCTCTCTAAGATGAACGGAGGATTCAGTACCGGTGTTACCGGTGGTGATTCGTCACTTCGCCGCCGCCGTCGCCGCCCTTCTCATAGGGACAAGGGTCATGATGTTTCCCGCTTTCCTGGCCATGCCCACGCTTCCTCCACTTCTGCTGAACAGCCAATCAGTTTGCAAAGAAATGTGTTTTTGATTGTTGTCGGACTTAATTACTCGAGAAAGTGGATCCTGGTCTTTGTTGTGCACTTGCTAATCTCTATCCGACTGCCCCTTTGCAGCAATGTTTCATTGTCTAATTTGTGTCGAACTAGACTTGGTAGTATGGGATCTTCGTCCTATGTGACCACTTATGACCCTGCAGTCATCCCTACCAGCCCTTTACTCGCGAAAGGAAGGTTTGTTGAATCTCAGCGGGGGATTAAAACCTCAACGGAACTTCTGAAAGTGCTGAATCGAATCTGGAGTTTGGAAGAACAGCACATGGCCAATATATCATTGATAAAAGCATTGAAAGCGGAGTTGGATCATGCTCGTGCTAATATTAAAAACTTGCTTCAGCAACGTAGTGCTGAGCGGGGCGAGATAGATGATTTGATTAAGCAGTTTGCTGAAGAAAAATTAGTTAGGAAGAATAAGGAGCAGAAACGGATAGAGGCTGCCATCAAGTCTGCAACGGATGAAGTTGAGGATGAGCGGAGGCTGAGAAAACAGTCCGAAACTCTGCATAGGAAATTAGCGAAGGATCTTTCCAAAGTTAAGTTTTCTCTTTCAAATGCTTTGAAAGATTTAGAGATAGAGAAAAAGTCTAGAATTCTGCTGGAAGATCTGTGTGATGAATTTGCCAGAGGCATAAAAGACTACGACCAAGACTTGCATGCTTTAAAACAAAAAACAAACAAGAATTGCGTGGGAAGGACTGACTTTGACCGTTTAATTCTCCACATCTCGGAGTCATGGCTTGATGAAAGGATGCAGATGCAGAAGGATGGTCAGAGGAGCCGAGCGGAGAAAAGTTCAATAGTGGAGAAGTTATACTTGGAAATAGAGAGCTTCCTTCAAGATAAGCATGTTGATGCTGATAAGATCAGCAGGAATCTGTTGCCCAGGGATCAACGGAATTCACAAGAATCTATCCATTTTAATGAGCTTACAAGTGCACCACAGATGGCTGGTGGTCAAGAAGATTCTGTGGGCTGTGATTCTCGTTGTTTTGAGCTTCACAAGCCGAGCTTCCATAACTTGACACTAAATGGAAATGAAACTATGGATGGACATGTTGATGGAACTAAGAAATTTAAAGATTCAAAGGTACATTTTAGGTCGCATGGAAGGATGAAGAGCCATACTCCATCGAGTCTGCAAGTTAAGTTCGAAGAGCAAATGGCTTGGGCTGTGTCGCTAACTGAAAACAAAAATTCATCCGTCATAAATCCAGAGGGAGAGTTGGCAGAAAAGAATCTCACTGAAACAGTTGCTTCCCACAAATCCGAAGAGCATGATGAAGGGGCCTACGGCAGTGACAGTGAAGGAAAGATAACAGGAGACGACAAAATCCATGAATTGGTTTTGAACAAGATGGTTGATGATGACAATCGGAGAAATGAGCAATTCGTAGTAGGCGGAGGAAATATGCATCCTCAGAACAATTATGGGGAGGCTTCGTGTAGCAGCTCGGGATGGAGGAATCAAGCGAGTCCGATACGGCAATGGGAATTGAAAACTCCCGAAGAAGACGTATCGAAGGAGGATACTCTGAAAGCGAAGCTTCTTGAAGCACGGTCAAGAGGGCATCGATCAAGACTAAAAGTTTTCAAAGGTTTGTCTTAG 2049 44.66 MEKREGKSGEVGGEEENLGEKLRREVVVGKKGGPCTPVPSWRLWAPKESIIDQKPFPNSVSARKLGAALWEFQHYLPLSKMNGGFSTGVTGGDSSLRRRRRRPSHRDKGHDVSRFPGHAHASSTSAEQPISLQRNVFLIVVGLNYSRKWILVFVVHLLISIRLPLCSNVSLSNLCRTRLGSMGSSSYVTTYDPAVIPTSPLLAKGRFVESQRGIKTSTELLKVLNRIWSLEEQHMANISLIKALKAELDHARANIKNLLQQRSAERGEIDDLIKQFAEEKLVRKNKEQKRIEAAIKSATDEVEDERRLRKQSETLHRKLAKDLSKVKFSLSNALKDLEIEKKSRILLEDLCDEFARGIKDYDQDLHALKQKTNKNCVGRTDFDRLILHISESWLDERMQMQKDGQRSRAEKSSIVEKLYLEIESFLQDKHVDADKISRNLLPRDQRNSQESIHFNELTSAPQMAGGQEDSVGCDSRCFELHKPSFHNLTLNGNETMDGHVDGTKKFKDSKVHFRSHGRMKSHTPSSLQVKFEEQMAWAVSLTENKNSSVINPEGELAEKNLTETVASHKSEEHDEGAYGSDSEGKITGDDKIHELVLNKMVDDDNRRNEQFVVGGGNMHPQNNYGEASCSSSGWRNQASPIRQWELKTPEEDVSKEDTLKAKLLEARSRGHRSRLKVFKGLS 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4974992 4977470 - Bpe004002.2 Bpe11g00645 110790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00645 682 MobiDBLite consensus disorder prediction 566 589 - -
Bpe11g00645 682 MobiDBLite consensus disorder prediction 1 25 - -
Bpe11g00645 682 PANTHER INTRACELLULAR PROTEIN TRANSPORTER USO1-LIKE PROTEIN 181 680 - -
Bpe11g00645 682 PANTHER INTRACELLULAR PROTEIN TRANSPORTER USO1-LIKE PROTEIN 13 136 - -
Bpe11g00645 682 Coils Coil 241 315 - -
Bpe11g00645 682 MobiDBLite consensus disorder prediction 86 126 - -
Bpe11g00645 682 PANTHER GB|AAF24581.1 181 680 IPR043424 -
Bpe11g00645 682 MobiDBLite consensus disorder prediction 615 638 - -
Bpe11g00645 682 PANTHER GB|AAF24581.1 13 136 IPR043424 -
Bpe11g00645 682 MobiDBLite consensus disorder prediction 610 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00645 - - - jre:109005585 597.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00672 Bpe11g00645 CCT
Bpe05g00672 Bpe11g00645 ECH
Bpe08g01512 Bpe11g00645 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01209 Bpe-Chr3:30910791 Bpe11g00645 Bpe-Chr11:4974992 8.00E-37 dispersed
Bpe08g01123 Bpe-Chr8:13186904 Bpe11g00645 Bpe-Chr11:4974992 5.05E-21 dispersed
Bpe11g00549 Bpe-Chr11:4205122 Bpe11g00645 Bpe-Chr11:4974992 3.94E-22 dispersed
Bpe04g00933 Bpe-Chr4:6250701 Bpe11g00645 Bpe-Chr11:4974992 3.54E-56 transposed
Bpe11g00645 Bpe-Chr11:4974992 Bpe05g00672 Bpe-Chr5:20401457 5.04E-116 wgd
Bpe11g00645 Bpe-Chr11:4974992 Bpe08g01512 Bpe-Chr8:15792648 5.47E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g80 Blo02g01132 Blo03g00236 . Bda08g00492 Bpe05g00672 . Bma07g01677 Bma14g00623 . . Cma02g01410 Cma15g01261 Car02g01182 Car15g01137 . . Cpe05g00369 . . . . . . . . . . . . . . Cone8ag0263 Cone12ag0268 . . . Csa05g00224 Chy09g01276 . . . Bda07g00468 . Bpe08g01512 Bpe11g00645 Bma05g00845 . . Cmo02g01440 Cmo15g01329 . . . . . Cpe13g00126 Bhi12g00168 . . Lac11g2030 Hepe06g1499 . Lcy12g1592 Cla01g00207 Cam01g0212 Cec01g0207 Cco01g0210 Clacu01g0207 Cmu01g0202 Cre09g2305 Lsi09g00195 . . Cme09g01820
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004600 2 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00645 Bpe_Chr11 FPKM 9.757333 10.352294 174.840027 168.500885 6.471456 6.139435 6.533692 97.004158 103.75959 94.69873