Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00655 GTCGAATTGGAGAAGAGGTTGGCCTTGATTAAAGCATGGGAGGAGAGCGAGAAAACCCGAGTTGAGAACAAGGCGTACAAGAAGCTGTCTGCTGTTAATTCATGGGAGAATAGCAAGAGAGGGACAGTAGAAGCACAACTGAGGATAATTGAGGAAAAACTGGAGAAAAAGAAGGCAGAATATGAAGAGGAGATGAACAACCAGATAGCTGAAATACACAAAGCGGGGGAAGAAAAGAGAGCGACTATTCAGGCAAAACGAAGTGAGCAATTCCTCAAGGTGGAAGAGACGGCTGCAAAATACAGATCGGCCGGCTTTTCGCCAAAGAAACTACTCGGATGCTTCAGCAGTTGA 354 45.76 VELEKRLALIKAWEESEKTRVENKAYKKLSAVNSWENSKRGTVEAQLRIIEEKLEKKKAEYEEEMNNQIAEIHKAGEEKRATIQAKRSEQFLKVEETAAKYRSAGFSPKKLLGCFSS 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5045114 5045742 + Bpe004012.1 Bpe11g00655 110800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00655 117 Coils Coil 40 78 - -
Bpe11g00655 117 PANTHER OS02G0117200 PROTEIN 1 117 - -
Bpe11g00655 117 PANTHER REMORIN-LIKE 1 117 - -
Bpe11g00655 117 Pfam Remorin, C-terminal region 5 110 IPR005516 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00655 - - - zju:107429925 168.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00655 Bpe-Chr11:5045114 Bpe13g00954 Bpe-Chr13:15426654 3.36E-48 dispersed
Bpe11g00655 Bpe-Chr11:5045114 Bpe12g00425 Bpe-Chr12:9858599 9.33E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g347 . . . . . . . . Cmo06g01081 . Cma02g01472 . Car02g01233 . . . Cpe05g00657 . . . . . . . . . . . . . . . Cone12ag0317 . Cone9ag0765 . . Chy09g01204 . . . . . . Bpe11g00655 . . . Cmo02g01507 . Cma06g01060 . Car06g00892 . Cpe08g00557 . Bhi12g00226 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Lsi09g00282 . . Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000535 3 7 5 4 4 3 4 3 2 3 3 3 4 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4 3 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00655 Bpe_Chr11 FPKM 355.737793 368.974396 561.00238 539.577515 198.866638 217.414032 183.854675 629.171021 686.957336 588.569336