Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00660 ATGGGAGCTTGCTGTTGTTGTTTCACGAAAGGAACTGAGGTGAATACTTCTCCAACACTTTATTGTTTCGCATTAGAAGAGCTAGAGCATGTTCCTCTGTCATCTCAGCATGCCCCTGTCCCTGCATTTTCATCACGGCTTCTGGTGGATACAAACTTAGATACATCAATTCCTGATACCTACAGGCCACCTCCTATACCCATGCCATATGATACTACGTTAGGACATCCACTTATTTCATTAGTTGCCCAAGCAATTGACAGGGACAAGGATGATGCAGATATGCGGACAACAAATTCTGGTTCTGCTCAAGAAACCGCCGGCTGCCATGCTCAAGAGCCCTCGGTGATGTCTGAAAACGTGAATGAATGCAACTGCAAACTCAAAATTGATCAAGAAATTGAGATTTCAAAGCCAGTGGACTCTGTAGTTTTAGACTTTGAGGAGGACTCTTGTCCCATCTGTTTGGAGGAATATGACAAAGAGAATCCGAAATTGATTACAAAGTGTGACCATTATTTTCATCTTGCGTGTATTCTAGAATGGATGGAAAGAAGTAATAGCTGTCCAGTTTGTGATCAGGTTTGCCTCTCTTTTTCTTTCAGTATTCGCAGAATAAATTGGTAA 627 41.95 MGACCCCFTKGTEVNTSPTLYCFALEELEHVPLSSQHAPVPAFSSRLLVDTNLDTSIPDTYRPPPIPMPYDTTLGHPLISLVAQAIDRDKDDADMRTTNSGSAQETAGCHAQEPSVMSENVNECNCKLKIDQEIEISKPVDSVVLDFEEDSCPICLEEYDKENPKLITKCDHYFHLACILEWMERSNSCPVCDQVCLSFSFSIRRINW 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5072254 5073508 - Bpe004017.1 Bpe11g00660 110805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00660 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 194 IPR013083 -
Bpe11g00660 208 SUPERFAMILY RING/U-box 146 197 - -
Bpe11g00660 208 SMART ring_2 152 192 IPR001841 -
Bpe11g00660 208 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Bpe11g00660 208 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 197 - -
Bpe11g00660 208 Pfam Ring finger domain 150 192 IPR001841 -
Bpe11g00660 208 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 197 - -
Bpe11g00660 208 MobiDBLite consensus disorder prediction 92 112 - -
Bpe11g00660 208 MobiDBLite consensus disorder prediction 97 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00660 - - - mnt:21411586 245.358
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00103 Bpe11g00660 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00611 Bpe-Chr4:3918585 Bpe11g00660 Bpe-Chr11:5072254 2.29E-11 dispersed
Bpe07g00103 Bpe-Chr7:741421 Bpe11g00660 Bpe-Chr11:5072254 4.79E-63 dispersed
Bpe11g00042 Bpe-Chr11:302999 Bpe11g00660 Bpe-Chr11:5072254 4.73E-24 dispersed
Bpe11g00660 Bpe-Chr11:5072254 Bpe11g01184 Bpe-Chr11:8787907 4.43E-25 dispersed
Bpe11g00660 Bpe-Chr11:5072254 Bpe02g01427 Bpe-Chr2:17702522 2.87E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g12 . . . . . Bpe07g00103 . Bma14g00607 . . Cma02g01003 Cma15g01239 . Car15g01116 . . Cpe05g00349 . . . . . . . . . . . . . . . Cone12ag0296 . . . Csa05g00265 Chy09g01243 . . . Bda07g00483 . . Bpe11g00660 . . . Cmo02g01472 Cmo15g01303 . . . . . Cpe13g00146 Bhi12g00284 . . . . . . Cla01g00249 Cam01g0254 Cec01g0246 Cco01g0260 Clacu01g0252 Cmu01g0242 Cre09g2267 Lsi09g00240 . . Cme09g01778
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00660 Bpe_Chr11 FPKM 1.161164 1.296417 6.618628 6.008373 17.241714 12.746833 14.397793 0.112277 0.047576 0.085096