Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00661 ATGCAGGAAGAGCATAGGAAAACTAATGTTAAAGACGTTGATGCCTATTTTGCTGAAGAAGCTGAAAACGACAATGCGATGGGTGATAATGAAGTCGGAAATAGAGATTTTAGCAAGTTGGAGTTGAAACCTGATCACAATAATCGACCTTTGTGGGCTTGTGCTGATGGTCGCATTTTTTTAGAGACTTTCTCATCCTTGTATAAACAAGCTTATGATTTTCTTATTGCTATTGCTGAGCCAGTTTGTAGGCCAGAGTCGATGCATGAATACAGCCTTACACCACACTCTCTGTATGCTGCTGTTTCTGTTGGTCTCGAAACAGAAACTATCATTGCTGTTTTGGATAAGCTGTCAAAAACTAAGCTCCCTAAAGACATGATTGATTTTATTTATGGATCTACTGCCAATTATGGAAAGGTATTGAAGAAATTGCTCAAGGATGAGGTTATAGGTAGAGCTAGAACTATATCCGAGTTACTTTTTGACCCTGTTCATTGTCCGGCAATTTATAAGAGCTTGAATGGAGGTGATGGATTTACAATTAGCAAAACAATGGGTGAGCTTGGGACTGATCAGGGTTTGCTAAATGAGGCAGAAGTTGCGGCTGCTGCTGAGGAAAAAGAGACTCATTCCTTTGAGATTGACCCGTCTCAGGTCGAGAATGTCAAACAACGATGCTTGCCTAATGCTTTAAATTATCCGATGTTGGAGGAGTATGACTTTAGAAATGACACTGTTAATCCTGATCTTGACATGGAACTGAAGCCTCAAGCTCAACCACGGCCATATCAAGAAAAGAGTCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATTATTGTGTTACCTTGTGGGGCTGGAAAGTCCTTAGTTGGCGTTTCTGCTGCCTGCAGAATACGAAAAAGTTGTCTCTGTCTGGCGACAAATGCTGTTTCTGTGGATCAATGGGCTTTTCAATTCAAGCTGTGGTCAAACATTCGAGATGAACAAATTTGTCGATTCACATCTGATAGCAAAGAAAGATTTAGGGGCAATGCTGGAGTAGTTGTTACTACGTATAATATGGTTGCTTTTGGTGGCAAGCGATCAGAAGAGTCAGAAAAGATTATTGAAGAGATAAGAAATAGAGAATGGGGTTTGCTTCTCATGGATGAGGTGCATGTTGTTCCTGCTCACATGTTTCGGAAGGTTATAAGCATAACCAAGTCTCATTGCAAGCTTGGACTCACTGCCACCCTTGTTCGAGAGGATGAAAGGATTACGGATCTGAACTTCCTGATTGGCCCCAAATTGTATGAAGCAAATTGGTTGGATCTTGTGAAATGTGGATATATTGCGAATGTGCAGTGTGCGGAAGTGTGGTGTCCAATGACGAAGGAATTTTTTGCAGAATATTTGAAGAAAGAAAACTCCAAGAAAAAGCAGGCACTTTATGTGATGAACCCGAACAAGTTCAGGGCATGTGAGTTTCTTATCCGGTTTCATGAGCAGCAACGTGGTGATAAAATAATCGTTTTTGCAGACAATCTTTTTGCACTCACAGAATATGCAATGAAGCTTCGCAAGCCTATGATCTATGGTGCAACAAGCCATGTTGAGAGGACAAAAATTCTTGAAGCCTTTAAAACTAGTCGAGATGTGAATACTGTTTTTCTTTCAAAGGATTTTTTAGAGGTTCATGAATTATTGCCCGAGCTAATTTTCTCCTACTTTCCTGTTTATAACGTCCTTTTTGTTAGATTGTGGTTTTTACTTTACTTTCAGGTAGGTGATAACTCTATAGATATCCCTGAGGCAAATGTAATTATCCAGATTTCATCACATGCGGGGTCTAGACGTCAAGAAGCTCAACGACTGGGCCGAATTCTTCGAGCTAAGGGTAAACTTCAAGATAGAATGGCAGGAGGTAAAGAAGAGTACAATGCATTTTTCTATTCCCTAGTTTCTACTGATACACAGGAGATGTATTACTCAACTAAGAGACAGCAGTTTTTGATTGATCAAGGTTACAGTTTTAAGGTGATCACGAGCTTGCCTCCACCTGATTCAGGAGCTGATTTGAGCTTTCACCGGCTTGAGGATCAGTTAGCACTTCTCGGAAAGGTGTTAAGTGCGGGTGACGATGCTGTAGGCTTGGAGCAATTAGAAGAAGATGCAGATGATATAGCCCTTCACAAGGCTCGTCGGTCCATGGGATCTATGAGTGCAATGTCAGGAGCTAATGGGATGGTTTACATGGAATACAGTACCGGACGGAAACTTGCTGGACAAGGCCAGCTTAAGAGTAAGCCAAAGGACCCGGCAAAGCGACATTATCTGTTCAAAAAGCGGTTTGCTTGA 2349 41.17 MQEEHRKTNVKDVDAYFAEEAENDNAMGDNEVGNRDFSKLELKPDHNNRPLWACADGRIFLETFSSLYKQAYDFLIAIAEPVCRPESMHEYSLTPHSLYAAVSVGLETETIIAVLDKLSKTKLPKDMIDFIYGSTANYGKVLKKLLKDEVIGRARTISELLFDPVHCPAIYKSLNGGDGFTISKTMGELGTDQGLLNEAEVAAAAEEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSNIRDEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKCGYIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILEAFKTSRDVNTVFLSKDFLEVHELLPELIFSYFPVYNVLFVRLWFLLYFQVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSFHRLEDQLALLGKVLSAGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHYLFKKRFA 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5077561 5082605 + Bpe004018.2 Bpe11g00661 110806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00661 782 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 272 434 IPR014001 -
Bpe11g00661 782 PANTHER RAD25/XP-B DNA REPAIR HELICASE 34 557 - -
Bpe11g00661 782 Pfam ERCC3/RAD25/XPB C-terminal helicase 443 557 IPR032438 -
Bpe11g00661 782 Pfam ERCC3/RAD25/XPB C-terminal helicase 591 724 IPR032438 -
Bpe11g00661 782 TIGRFAM rad25: DNA repair helicase rad25 36 557 IPR001161 GO:0003678|GO:0006289|GO:0006367
Bpe11g00661 782 PANTHER RAD25/XP-B DNA REPAIR HELICASE 590 781 - -
Bpe11g00661 782 Gene3D - 251 442 IPR027417 -
Bpe11g00661 782 SMART helicmild6 517 629 IPR001650 -
Bpe11g00661 782 PANTHER DNA REPAIR HELICASE XPB1-LIKE 34 557 - -
Bpe11g00661 782 PANTHER DNA REPAIR HELICASE XPB1-LIKE 590 781 - -
Bpe11g00661 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 436 IPR027417 -
Bpe11g00661 782 PRINTS Xeroderma pigmentosum group B protein signature 273 295 - -
Bpe11g00661 782 PRINTS Xeroderma pigmentosum group B protein signature 135 154 - -
Bpe11g00661 782 PRINTS Xeroderma pigmentosum group B protein signature 242 268 - -
Bpe11g00661 782 PRINTS Xeroderma pigmentosum group B protein signature 380 400 - -
Bpe11g00661 782 PRINTS Xeroderma pigmentosum group B protein signature 504 526 - -
Bpe11g00661 782 PRINTS Xeroderma pigmentosum group B protein signature 49 69 - -
Bpe11g00661 782 PRINTS Xeroderma pigmentosum group B protein signature 446 468 - -
Bpe11g00661 782 PRINTS Xeroderma pigmentosum group B protein signature 484 499 - -
Bpe11g00661 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 726 IPR027417 -
Bpe11g00661 782 SMART ultradead3 257 438 IPR014001 -
Bpe11g00661 782 Pfam Type III restriction enzyme, res subunit 260 416 IPR006935 GO:0003677|GO:0005524|GO:0016787
Bpe11g00661 782 Gene3D - 443 717 IPR027417 -
Bpe11g00661 782 CDD DEXHc_XPB 253 422 - -
Bpe11g00661 782 Pfam Helicase conserved C-terminal domain 51 141 IPR032830 -
Bpe11g00661 782 CDD SF2_C_XPB 453 651 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00661 K10843 ERCC3, XPB; DNA excision repair protein ERCC-3 [EC:5.6.2.4] - zju:107429869 1280.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00104 Bpe11g00661 CCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00661 Bpe_Chr11 FPKM 0.938938 1.308968 1.447207 2.050285 6.6726 5.841054 6.562735 0.267546 0.160303 0.0