Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00669 ATGGCGGCCGTTTCCAACTCCCTGTCTCTGAAGCATGGGATCTCTCTTTGGTGTCCTAGCTCTGCTTCACTAAGTGGAGCTCGTCGGCCTTCTTCTTTTTCTTCTAAGAGCTTCAGAAGGGGCTATGTCGCTGCCTCCTCCGCTTTTGCCAATGAGAATAGAGAGTTCGTGATTGTTGGTGGTGGTAATGCTGCTGGTTATGCGGCAAGAACTTTCGTCGAGCACGGTATGGCCGATGGACGGCTCTGTATAGTGTCCAAAGAGGCTTATGCTCCTTATGAACGTCCGGCTTTAACCAAAGGTTATTTGTTTCCTCCGGATTCAAAACCGGCACGCTTACCTGGGTTTCATACTTGTGTTGGATCTGGTGGTGAACGACAAACTCCAGAATGGTACGAAGAAAAAGGAATTGAGATGATCTACAAAGATCCAGTAACCAATATCGATATCGAAAATCGAACCCTGGGTACTAGTTCGGGGAAACTGTTAAAGTATGGATCTCTTATAATTGCAACAGGATGCACTGCCTCAAGATTTCCCGATAAAATTGGGGGTAACCTACATGGTGTTCATTACATTCGAGATGTAGCCGATGCAGATATGCTAGTCTCAGCGTTGGAGAAAGCACAAAAAGTGGTTGTTGTTGGTGGTGGTTACATTGGCATGGAGGTTGCTGCTGCAGCTGTTGGTTGGAAACTCGACACGACAATAATATTTCCAGAGAGCCATCTTTTGCAAAGACTATTTACTCCTTCATTGGCCCAGAAATATGAAGAACTTTACAAAGAAAATGGTGTCAAATTCTTGAAGGGGGCATCCATAAAAAATATAGAAGCTGGTGCGAATGGAAAAGTAACTGCTGTTAAACTTGATGATGGATCAACCATAGAAGCAGATACGGTTATCATTGGCGTTGGAGCAAGACCTGCTGTCAGTCCATTCGAAAGGGTGGGACTGAATGAAACTGTTGGAGGTATACAGGTTGATGGCCAGTTCCGAACTAGTATTCCAGGAATCTTTGCAGTTGGAGATGTAGCAGCATTTCCCCTGAAGATGTATGATCGTGTGGCTAGAGTCGAACATGTGGATCATGCTCGTAGATCTGCTCAACATTGTGTTAAAGCTTTACTGAGTGCACATACTCACGTATACGACTATCTTCCATACTTCTATTCAAGAGTGTTCGAATACGAAGGTAGCCCCAGGAAAATATGGTGGCAATTTTTCGGCGACAATGTTGGAGAGACCGTTGAAATCGGTAATTTCGATCCCAAGATTGCCACTTTCTGGATTGATTCTGGAAAATTGAAGGGAGTTTTGCTGGAAACTGGAAGTCCTGAGGAATTTAAACTGCTCCCCGAACTTGCAAGGAGGCAGCCATTGGTTGATAAGTCCAAGCTTGAGAATGCGTCATCAGTTGAGAAAGCACTGGAGATTTTGGAAGTATCTTTGCAGTCGTAG 1461 44.63 MAAVSNSLSLKHGISLWCPSSASLSGARRPSSFSSKSFRRGYVAASSAFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPPDSKPARLPGFHTCVGSGGERQTPEWYEEKGIEMIYKDPVTNIDIENRTLGTSSGKLLKYGSLIIATGCTASRFPDKIGGNLHGVHYIRDVADADMLVSALEKAQKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPESHLLQRLFTPSLAQKYEELYKENGVKFLKGASIKNIEAGANGKVTAVKLDDGSTIEADTVIIGVGARPAVSPFERVGLNETVGGIQVDGQFRTSIPGIFAVGDVAAFPLKMYDRVARVEHVDHARRSAQHCVKALLSAHTHVYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLETGSPEEFKLLPELARRQPLVDKSKLENASSVEKALEILEVSLQS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5134809 5140316 + Bpe004026.1 Bpe11g00669 110814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00669 486 Gene3D - 57 372 IPR036188 -
Bpe11g00669 486 PRINTS FAD-dependent pyridine nucleotide reductase signature 57 76 - -
Bpe11g00669 486 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Bpe11g00669 486 PRINTS FAD-dependent pyridine nucleotide reductase signature 298 314 - -
Bpe11g00669 486 PRINTS FAD-dependent pyridine nucleotide reductase signature 324 346 - -
Bpe11g00669 486 PRINTS FAD-dependent pyridine nucleotide reductase signature 211 229 - -
Bpe11g00669 486 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 7 485 - -
Bpe11g00669 486 Pfam Pyridine nucleotide-disulphide oxidoreductase 56 369 IPR023753 GO:0016491
Bpe11g00669 486 SUPERFAMILY FAD/NAD(P)-binding domain 55 398 IPR036188 -
Bpe11g00669 486 Gene3D - 389 476 IPR016156 GO:0016491|GO:0050660
Bpe11g00669 486 PRINTS Pyridine nucleotide disulphide reductase class-I signature 339 346 - -
Bpe11g00669 486 PRINTS Pyridine nucleotide disulphide reductase class-I signature 211 236 - -
Bpe11g00669 486 PRINTS Pyridine nucleotide disulphide reductase class-I signature 299 313 - -
Bpe11g00669 486 PRINTS Pyridine nucleotide disulphide reductase class-I signature 55 77 - -
Bpe11g00669 486 PANTHER APOPTOSIS-INDUCING FACTOR 1 7 485 - -
Bpe11g00669 486 Gene3D - 179 306 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00669 K08232 E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - pvy:116107428 851.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00757 Bpe-Chr2:5341913 Bpe11g00669 Bpe-Chr11:5134809 1.37E-120 dispersed
Bpe11g00669 Bpe-Chr11:5134809 Bpe11g01539 Bpe-Chr11:11473060 2.83E-116 dispersed
Bpe11g00669 Bpe-Chr11:5134809 Bpe04g01540 Bpe-Chr4:21755128 1.34E-134 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00669 Bpe_Chr11 FPKM 38.41938 40.004936 36.721634 36.696667 22.798611 21.596535 22.664558 38.854473 43.940426 38.976593