Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00682 ATGATCTTCTTCAGAAACCTGTGTGTTTTATCCTTGGTTTTCTTGTCTCTTGTCTCTCCTCGTCTGGTTCATGCTGCGCTTTTTGAAGTCCGAAACAATTGTCCATACACTGTTTGGGCCGCCGCGGTTCCCGGTGGCGGCCTTCAGCTAAACAGAAACGATGTCTGGAGCTTCAACGTTAACCCAGGTACGACCGGCGGCCGTGTGTGGGGTCGAACCAACTGTGACTTTGATGGTTCTGGAAGAGGAGGATGCCAGACTGGGGACTGCAATGGCCTCCTACAATGTCAAGCCTACGGCCGACCACCCAACACGTTAGCCGAATTCGCATTAAATCAGTTCAACAACTTGGATTTCTTCGACATTTCTCTCGTTGACGGGTTCAACATTCCGATGGACTTCAGTCCCACTTCCGGTGGGTGCAGGGGAATTCGGTGCTCGGCCGACATCAATGAGCAGTGTCCTAATGAGCTCAGGGCTCCCGGCGGCTGCAATAATCCATGCACTGTGTTCGGAACCAATGAGTATTGTTGTACTTCCGGCTTTTGTACGGCAACACCTTTATCGAGGTATTTCAAAAGTCGTTGCCCAGATGCTTATAGCTACCCTAAAGATGATCAGACAAGCACTTTCACTTGCCCAGGAGGAACCAACTACAGGGTTACGTTCTGCCCTTGA 678 50.59 MIFFRNLCVLSLVFLSLVSPRLVHAALFEVRNNCPYTVWAAAVPGGGLQLNRNDVWSFNVNPGTTGGRVWGRTNCDFDGSGRGGCQTGDCNGLLQCQAYGRPPNTLAEFALNQFNNLDFFDISLVDGFNIPMDFSPTSGGCRGIRCSADINEQCPNELRAPGGCNNPCTVFGTNEYCCTSGFCTATPLSRYFKSRCPDAYSYPKDDQTSTFTCPGGTNYRVTFCP 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5246196 5246873 - Bpe004038.1 Bpe11g00682 110827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00682 225 CDD TLP-P 28 225 - -
Bpe11g00682 225 ProSiteProfiles Thaumatin family profile. 25 225 IPR001938 -
Bpe11g00682 225 PANTHER THAUMATIN-LIKE PROTEIN 4 225 - -
Bpe11g00682 225 PIRSF PR5 2 225 IPR001938 -
Bpe11g00682 225 ProSitePatterns Thaumatin family signature. 81 96 IPR017949 -
Bpe11g00682 225 PANTHER OS03G0233200 PROTEIN 4 225 IPR001938 -
Bpe11g00682 225 Pfam Thaumatin family 32 225 IPR001938 -
Bpe11g00682 225 SUPERFAMILY Osmotin, thaumatin-like protein 26 225 IPR037176 -
Bpe11g00682 225 SMART tha2 28 225 IPR001938 -
Bpe11g00682 225 Gene3D Thaumatin 26 225 IPR037176 -
Bpe11g00682 225 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Bpe11g00682 225 PRINTS Pathogenesis-related protein signature 68 79 IPR001938 -
Bpe11g00682 225 PRINTS Pathogenesis-related protein signature 46 55 IPR001938 -
Bpe11g00682 225 PRINTS Pathogenesis-related protein signature 118 134 IPR001938 -
Bpe11g00682 225 PRINTS Pathogenesis-related protein signature 81 110 IPR001938 -
Bpe11g00682 225 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00682 - - - csv:101202921 370.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00682 Bpe-Chr11:5246196 Bpe15g00474 Bpe-Chr15:16079990 2.40E-42 dispersed
Bpe11g00682 Bpe-Chr11:5246196 Bpe05g00635 Bpe-Chr5:20208853 7.19E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g388 . . . . . . . . . . . Cma15g01207 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00314 . . . . . . . Bpe11g00682 . . . . Cmo15g01272 . . . . . Cpe13g00169 . . . . . . . Cla01g00291 Cam01g0302 Cec01g0294 Cco01g0309 Clacu01g0302 Cmu01g0287 Cre09g2220 Lsi09g00294 . . Cme09g01729
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00682 Bpe_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 1.025983 1.512968 0.148448 1.649294 1.124455