Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00684 ATGTTGGCTGGTTGTTCTAGTTCAACATTACTGTCACCGAGGCATAGATTAAGGAGCGAAGCAGCAGCGCAGTTTCAAGCTTGCCATTTCCAGTTGCCTTCGATGAACACGCAGAGATTGGATTTACCATGTACCAGTTTTTCTCGCAAAGAGATCTCACGCTCGCAGCCGATTAGGCCAGCTGGGCTTTCGGTGGAGAAGACAATCGATTCAAAAGCTACCAGTTGCTCTCTCAAACAGATTAGGTTACCTCCTTTAGCTGCTACAAGCCTTCAGACGCCATTTTCAGAGGTTCGGAGAGAGATTGGCTGCGAGTTTTGGGAGAAAGGGAAGAACTTGAAAAGGTTAGCAGAAGATGAAGTCTGTGCAGACATAACAAAGAGGAAGAGAAGTGGAAGCTGCAAAAATGGAGAATGTATCCATCATTTGACATTTGAACAATTTGGCGGCGCTGACTATTTTTGGTTTCAGCCAGGTTTCAGTCACCCTCAAGAAGTTTGCTTTGTTCCGAGCGAAGTGATTTCATCACCCCCGGTAGAAAGTGGGGTGAACAAGATAACTGAATTCGGAGAGAAAGAAGGAGGCGCAGCCGTTCCGGCGAAAAACTTGTCAGATTCGAGTGGTTCGTCAGAAAATCAAAGCTTTGTCCTTCTGATAAACGAAAATGCCGCAGAAGAAGTTGGAAATGGGTCTAGAAATCCACATTTACTTCCTGGGTTTGGATCAGAAACTGGAACCGCAGAAAATCGAGGAGAGCGAGAAGGGTTTGAGCTCGTCAGCTTGCTGACGGCCTGCGTCGAAGCGATTCGATCGAAGAACATCGCATTGATCAACCATCTTATCGACAGATTAGGTGATCTTGCTTCTCCTCGAGGATCTTCGATGAGCCGTCTGGTGTCTTACTATACTGAAGCCTTAGCTCTGCGAGTGGCAAGACTATGGCCGCACATATTTCACATATCGACTCCCGGAGATTTCGATCGCGCTGAAGAAGATTCCGGCGCTGCATTAAGGCTTCTAAACCAGGTGAGCCCAATCCCAAAGTTCATCCATTTCACGTCAAATGAGGTACTCTTAAGAGCTTTTGACGGGAAAGACAGAGTTCACATCATAGATTTCGAGATAAAGCAAGGCCTTCAATGGCCGAGCTTGTTTCAAAGTTTAGCTTCGAGAACAAATCCACCTACCCATGTTAGGATCACCGGCGTAGGAGAATCGAAGCAGGAATTGAACGAGGCAGGTGACCGGCTTTCCGGATTTGCTGAGGCGTTGAATCTGCCATTCGAGTTCCACCCAGTCGTCGACCGGCTAGAAGACGTCCGGCTGTGGATGCTCCACGTGAAGGACCAAGAATGTGTAGCCGTGAATTGTGTTTTTCAGCTTCATAAACTGCTCCACGACCGCCATGGAAATGCAATAAGAAACTTTCTAGCCCTCATCAGAAGCACAAATCCTTCAACTGTCGTCATTGCAGAGCAAGAATCCGATCACAACAACCCAAATTTAGAGATGAGAGTTTTCAACACCTTGAAATACTACTCTGCCATTTTCGACTCCTTCGATTCGATATTTCCTCTGAACAACCCTGTCCGAATCAAAATAGAAGAGATGTTTGCAATGGAGGTTCGGAACATCATCGCTTGTGAGGGAATCGAGAGATTCGAGAGGCACGAGAGCTTCGCGAAATGGAGAAAAACTATGGAGTATAATGGGTTTAAGTGCACCGGGATTTCCGATCGAGAAATGATTCAAAGCCGAATTCTGCTGAAGATGTATGCTTGTGATAGTTATAATGTGAGCAAGCCAACTGAAGATGGAGCGTTGACTCTAAACTGGGAGGAGCAGCCTCTCTACACCGTGTCAGCATGGACGCCATTGCCATCAGAGATTGGAGGCAGCTCATCTTCTTTTTCTCGGACTTGA 1923 46.65 MLAGCSSSTLLSPRHRLRSEAAAQFQACHFQLPSMNTQRLDLPCTSFSRKEISRSQPIRPAGLSVEKTIDSKATSCSLKQIRLPPLAATSLQTPFSEVRREIGCEFWEKGKNLKRLAEDEVCADITKRKRSGSCKNGECIHHLTFEQFGGADYFWFQPGFSHPQEVCFVPSEVISSPPVESGVNKITEFGEKEGGAAVPAKNLSDSSGSSENQSFVLLINENAAEEVGNGSRNPHLLPGFGSETGTAENRGEREGFELVSLLTACVEAIRSKNIALINHLIDRLGDLASPRGSSMSRLVSYYTEALALRVARLWPHIFHISTPGDFDRAEEDSGAALRLLNQVSPIPKFIHFTSNEVLLRAFDGKDRVHIIDFEIKQGLQWPSLFQSLASRTNPPTHVRITGVGESKQELNEAGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKDQECVAVNCVFQLHKLLHDRHGNAIRNFLALIRSTNPSTVVIAEQESDHNNPNLEMRVFNTLKYYSAIFDSFDSIFPLNNPVRIKIEEMFAMEVRNIIACEGIERFERHESFAKWRKTMEYNGFKCTGISDREMIQSRILLKMYACDSYNVSKPTEDGALTLNWEEQPLYTVSAWTPLPSEIGGSSSSFSRT 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5266596 5268518 + Bpe004040.1 Bpe11g00684 110829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00684 640 PANTHER SCARECROW-LIKE PROTEIN 28 6 628 IPR030027 -
Bpe11g00684 640 Pfam GRAS domain family 258 624 IPR005202 -
Bpe11g00684 640 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 628 IPR005202 -
Bpe11g00684 640 ProSiteProfiles GRAS family profile. 249 624 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00684 - - - tcc:18606459 812.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01474 Bpe-Chr8:15483011 Bpe11g00684 Bpe-Chr11:5266596 0 dispersed
Bpe11g00684 Bpe-Chr11:5266596 Bpe11g01481 Bpe-Chr11:11017199 2.76E-92 dispersed
Bpe11g00684 Bpe-Chr11:5266596 Bpe13g01052 Bpe-Chr13:16168816 1.49E-73 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00754 . 5 284 GRAS Transcription Factor Family AT2G29060 60.1 4.2e-100 362.5
Bpe04g01322 . 58 745 GRAS Transcription Factor Family AT2G37650 54.5 2.0e-204 709.1
Bpe11g00754 . 1 284 GRAS Transcription Factor Family AT2G37650 58.1 1.5e-98 357.5
Bpe04g01322 . 289 746 GRAS Transcription Factor Family AT3G46600 50.9 1.2e-124 443.7
Bpe11g00754 . 1 285 GRAS Transcription Factor Family AT3G46600 61.8 1.9e-106 383.3
Bpe13g00121 CCT 37 453 GRAS Transcription Factor Family AT3G49950 61.8 1.3e-139 493.0
Bpe15g00304 CCT 38 451 GRAS Transcription Factor Family AT3G49950 59.2 2.2e-131 465.7
Bpe08g00098 CCT,ECH 55 738 GRAS Transcription Factor Family AT1G07530 51.5 1.4e-192 669.8
Bpe11g00755 . 143 589 GRAS Transcription Factor Family AT1G07530 51.9 9.9e-133 471.1
Bpe11g00754 . 5 285 GRAS Transcription Factor Family AT1G07530 59.9 1.6e-103 374.0
Bpe15g00438 . 78 530 GRAS Transcription Factor Family AT4G36710 53.7 1.7e-130 463.0
Bpe03g00717 . 21 453 GRAS Transcription Factor Family AT5G41920 64.2 1.9e-143 505.8
Bpe02g00947 . 361 743 GRAS Transcription Factor Family AT5G41920 56.0 6.4e-115 411.0
Bpe13g00449 . 1 599 GRAS Transcription Factor Family AT5G66770 53.9 2.7e-159 558.9
Bpe09g00134 . 24 514 GRAS Transcription Factor Family AT1G50600 56.6 5.0e-160 561.2
Bpe14g00729 BCT 92 513 GRAS Transcription Factor Family AT1G50600 63.2 4.3e-156 548.1
Bpe07g00645 BCT 88 512 GRAS Transcription Factor Family AT1G50600 61.3 3.7e-147 518.5
Bpe01g00045 . 103 538 GRAS Transcription Factor Family AT1G50600 56.3 3.5e-137 485.3
Bpe08g00028 . 108 546 GRAS Transcription Factor Family AT1G50600 55.9 5.9e-137 484.6
Bpe11g00518 . 194 572 GRAS Transcription Factor Family AT1G50600 62.5 5.0e-136 481.5
Bpe02g01597 CCT,ECH 180 548 GRAS Transcription Factor Family AT1G50600 52.6 6.2e-110 394.8
Bpe02g00616 CCT,ECH 210 579 GRAS Transcription Factor Family AT1G50600 52.2 2.6e-108 389.4
Bpe08g01474 . 1 632 GRAS Transcription Factor Family AT1G63100 54.2 2.1e-176 615.9
Bpe11g00684 . 1 624 GRAS Transcription Factor Family AT1G63100 54.1 4.9e-173 604.7
Bpe13g01052 . 33 571 GRAS Transcription Factor Family AT1G14920 66.2 5.5e-199 690.6
Bpe02g01376 . 46 585 GRAS Transcription Factor Family AT1G14920 63.3 1.2e-190 662.9
Bpe14g00078 . 47 586 GRAS Transcription Factor Family AT1G14920 62.8 2.7e-190 661.8
Bpe02g02000 . 33 576 GRAS Transcription Factor Family AT1G14920 63.2 2.3e-189 658.7
Bpe09g00091 . 42 437 GRAS Transcription Factor Family AT1G55580 52.6 2.8e-103 372.5
Bpe03g00731 . 3 251 GRAS Transcription Factor Family AT1G55580 59.9 6.2e-79 291.6
Bpe14g00078 . 1 587 GRAS Transcription Factor Family AT1G66350 61.1 5.3e-191 664.1
Bpe02g01376 . 42 586 GRAS Transcription Factor Family AT1G66350 64.8 2.6e-190 661.8
Bpe13g01052 . 1 572 GRAS Transcription Factor Family AT1G66350 55.7 2.9e-165 578.6
Bpe02g02000 . 1 575 GRAS Transcription Factor Family AT1G66350 53.6 6.7e-162 567.4
Bpe08g00098 CCT,ECH 189 738 GRAS Transcription Factor Family AT1G07520 52.2 3.5e-153 538.5
Bpe11g00755 . 160 589 GRAS Transcription Factor Family AT1G07520 50.5 1.0e-120 430.6
Bpe11g00754 . 4 285 GRAS Transcription Factor Family AT1G07520 55.8 2.0e-92 336.7
Bpe14g00729 BCT 5 513 GRAS Transcription Factor Family AT5G48150 62.7 1.5e-179 625.9
Bpe07g00645 BCT 5 512 GRAS Transcription Factor Family AT5G48150 61.3 4.6e-176 614.4
Bpe09g00134 . 84 514 GRAS Transcription Factor Family AT5G48150 62.9 3.5e-160 561.6
Bpe08g00028 . 96 546 GRAS Transcription Factor Family AT5G48150 58.3 3.2e-145 511.9
Bpe01g00045 . 12 538 GRAS Transcription Factor Family AT5G48150 52.2 1.8e-143 506.1
Bpe11g00518 . 77 572 GRAS Transcription Factor Family AT5G48150 52.8 5.3e-140 494.6
Bpe02g00616 CCT,ECH 195 579 GRAS Transcription Factor Family AT5G48150 53.5 1.4e-116 416.8
Bpe13g01052 . 35 571 GRAS Transcription Factor Family AT2G01570 66.3 3.4e-202 701.4
Bpe14g00078 . 49 584 GRAS Transcription Factor Family AT2G01570 64.1 1.3e-193 672.9
Bpe02g02000 . 35 576 GRAS Transcription Factor Family AT2G01570 63.8 1.9e-192 669.1
Bpe02g01376 . 48 583 GRAS Transcription Factor Family AT2G01570 63.2 7.9e-191 663.7
Bpe14g00078 . 1 587 GRAS Transcription Factor Family AT1G66350 61.1 5.3e-191 664.1
Bpe02g01376 . 42 586 GRAS Transcription Factor Family AT1G66350 64.8 2.6e-190 661.8
Bpe13g01052 . 1 572 GRAS Transcription Factor Family AT1G66350 55.7 2.9e-165 578.6
Bpe02g02000 . 1 575 GRAS Transcription Factor Family AT1G66350 53.6 6.7e-162 567.4
Bpe14g00078 . 49 584 GRAS Transcription Factor Family AT3G03450 62.8 8.5e-187 650.2
Bpe02g01376 . 48 583 GRAS Transcription Factor Family AT3G03450 63.3 1.4e-186 649.4
Bpe13g01052 . 35 571 GRAS Transcription Factor Family AT3G03450 58.6 9.7e-167 583.6
Bpe02g02000 . 35 576 GRAS Transcription Factor Family AT3G03450 56.8 1.2e-161 566.6
Bpe02g01376 . 47 584 GRAS Transcription Factor Family AT5G17490 60.7 8.4e-168 587.0
Bpe14g00078 . 48 585 GRAS Transcription Factor Family AT5G17490 59.6 3.0e-165 578.6
Bpe13g01052 . 1 569 GRAS Transcription Factor Family AT5G17490 51.2 5.3e-146 514.6
Bpe02g02000 . 31 576 GRAS Transcription Factor Family AT5G17490 51.9 6.7e-141 497.7
Bpe02g00616 CCT,ECH 1 579 GRAS Transcription Factor Family AT1G21450 60.5 5.8e-181 630.9
Bpe02g01597 CCT,ECH 1 548 GRAS Transcription Factor Family AT1G21450 57.0 8.3e-172 600.5
Bpe14g00729 BCT 138 513 GRAS Transcription Factor Family AT1G21450 52.0 2.1e-114 409.8
Bpe07g00645 BCT 136 512 GRAS Transcription Factor Family AT1G21450 51.3 4.8e-111 398.7
Bpe11g00518 . 204 572 GRAS Transcription Factor Family AT1G21450 52.4 1.2e-109 394.0
Bpe09g00134 . 138 514 GRAS Transcription Factor Family AT1G21450 50.8 1.7e-108 390.2
Bpe15g01283 . 326 745 GRAS Transcription Factor Family AT5G59450 52.1 1.9e-126 449.9
Bpe04g01322 . 349 746 GRAS Transcription Factor Family AT5G59450 53.0 3.3e-123 439.1
Bpe11g00754 . 4 285 GRAS Transcription Factor Family AT5G59450 60.2 6.9e-105 378.3
Bpe01g00045 . 1 538 GRAS Transcription Factor Family AT4G17230 60.7 5.0e-176 614.4
Bpe08g00028 . 1 546 GRAS Transcription Factor Family AT4G17230 58.1 2.6e-169 592.0
Bpe14g00729 BCT 16 513 GRAS Transcription Factor Family AT4G17230 50.9 4.7e-134 474.9
Bpe07g00645 BCT 16 512 GRAS Transcription Factor Family AT4G17230 50.8 1.0e-128 457.2
Bpe14g00729 BCT 134 513 GRAS Transcription Factor Family AT2G04890 66.6 2.8e-150 528.5
Bpe07g00645 BCT 132 512 GRAS Transcription Factor Family AT2G04890 67.2 4.5e-148 521.2
Bpe09g00134 . 121 514 GRAS Transcription Factor Family AT2G04890 61.9 1.3e-144 509.6
Bpe11g00518 . 195 572 GRAS Transcription Factor Family AT2G04890 58.7 6.7e-128 454.1
Bpe01g00045 . 133 538 GRAS Transcription Factor Family AT2G04890 55.9 1.5e-124 443.0
Bpe08g00028 . 167 546 GRAS Transcription Factor Family AT2G04890 59.2 7.7e-124 440.7
Bpe02g01597 CCT,ECH 180 548 GRAS Transcription Factor Family AT2G04890 52.6 4.5e-108 388.3
Bpe02g00616 CCT,ECH 210 579 GRAS Transcription Factor Family AT2G04890 51.4 2.5e-106 382.5
Bpe11g00930 . 1 464 GRAS Transcription Factor Family AT1G50420 66.7 4.2e-174 607.8
Bpe15g00970 . 4 467 GRAS Transcription Factor Family AT1G50420 58.6 9.8e-155 543.5
Bpe02g00947 . 122 739 GRAS Transcription Factor Family AT3G54220 64.9 4.2e-209 724.5
Bpe03g00717 . 86 451 GRAS Transcription Factor Family AT3G54220 62.6 1.5e-129 460.3
Bpe06g00551 . 125 488 GRAS Transcription Factor Family AT3G54220 54.0 9.0e-111 397.9
Bpe06g00015 . 95 486 GRAS Transcription Factor Family AT4G37650 66.7 5.0e-152 534.6
Bpe10g00006 . 88 479 GRAS Transcription Factor Family AT4G37650 65.3 6.6e-152 534.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004828 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 0 4 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22050 PF03514 GRAS 2.20E-126 CL0063 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00684 Bpe_Chr11 FPKM 1.710727 1.345898 1.23862 1.273116 2.562013 2.670002 3.05792 1.120225 1.080842 1.028701