Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00693 ATGCAGGAGCCAGGCTTGGGAATGATGGCATCCGCTGCCGGCGGTGGTGGCTCTTGCTTGAGCGGCGAAGTATCGATCTCCGGCGACCACCATCACCGGCAAATCAAGGTTGAGATAGCAGCTCACCCTATATACGAGCAGCTTCTCGCCGCCCACGTGGCTTGTCTTCGTGTAGCTACCCCTATTGATCAGTTGCCGCTCATAGATGCGCAGCTGGCTCAATCGGAACATCTTTTACGCTCTTATGCAGCGCAGTCTCAACATCAGCAAGGCCATTCTCTCTCTCCCCATGAGAGCCAAGAGCTTGACAACTGCTTGGCACAGTATCTCTTAGTTTTGAGCTCCTTTAAAGAACAGCTTCAACAACATATTAGAGTTCATGCTGTAGAAGCCGTCATGGCCTGCCGCGAAATTGAAAACACTTTACAAGCTCTCACTGGAGCTAGTCTGGGAGAAGGCACAGGAGCAACAATGTCAGACGATGAAGAAGATATGCAGATGGATTTCTCGTTGGACCCATCTGGTGCAGATGGCCATGACATGATGGGTTTTGGCCCTCTTCTTCCTACTGAATCAGAAAGGTCTTTAATGGAAAGAGTTCGCCAAGAACTCAAGATTGAGTTGAAACAGGGTTTCAAATCTAGAATTGAAGACGTCAGAGAAGAGATACTGAGAAAAAGAAGGGCCGGAAAATTACCTGGGGATACAACGACTGTGCTCAAAAATTGGTGGCATCAGCATTCTAAGTGGCCTTATCCAACAGAAGATGACAAAGCAAAGCTAGTGGAGGAGACAGGGCTGCAACTGAAGCAAATAAACAACTGGTTCATCAACCAAAGAAAAAGGAACTGGCACAGCAATTCTCAGTCTGTAACATCCTTGAAGTCCAAGCGCAAGAGATAG 903 47.95 MQEPGLGMMASAAGGGGSCLSGEVSISGDHHHRQIKVEIAAHPIYEQLLAAHVACLRVATPIDQLPLIDAQLAQSEHLLRSYAAQSQHQQGHSLSPHESQELDNCLAQYLLVLSSFKEQLQQHIRVHAVEAVMACREIENTLQALTGASLGEGTGATMSDDEEDMQMDFSLDPSGADGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWHQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5336908 5339732 - Bpe004049.1 Bpe11g00693 110838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00693 300 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 300 - -
Bpe11g00693 300 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Bpe11g00693 300 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Bpe11g00693 300 SMART HOX_1 225 290 IPR001356 GO:0003677
Bpe11g00693 300 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 300 - -
Bpe11g00693 300 SMART KNOX1_2 33 77 IPR005540 GO:0003677|GO:0005634
Bpe11g00693 300 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677|GO:0005634
Bpe11g00693 300 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Bpe11g00693 300 SMART KNOX2_2 92 147 IPR005541 GO:0003677|GO:0005634
Bpe11g00693 300 Gene3D - 222 296 - -
Bpe11g00693 300 CDD homeodomain 226 287 IPR001356 GO:0003677
Bpe11g00693 300 Pfam KNOX2 domain 96 146 IPR005541 GO:0003677|GO:0005634
Bpe11g00693 300 SUPERFAMILY Homeodomain-like 225 290 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe08g01469 Bpe11g00693 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00068 Bpe-Chr4:541394 Bpe11g00693 Bpe-Chr11:5336908 1.48E-113 dispersed
Bpe08g00867 Bpe-Chr8:11044130 Bpe11g00693 Bpe-Chr11:5336908 0 dispersed
Bpe11g00693 Bpe-Chr11:5336908 Bpe11g01776 Bpe-Chr11:14122221 1.01E-27 dispersed
Bpe11g00693 Bpe-Chr11:5336908 Bpe08g01469 Bpe-Chr8:15405169 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22053 PF03791 KNOX2 4.40E-15 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00693 - - zju:107405822 508.449