Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00694 ATGTCCCGGAATTCTTCCTCTTTCGAAACCCTAACCCCTTCTCGCCATATTGATCGGATGATAAATCTTAATCACCGTAAATCCCCTTCGAGAGCTATATATTCTGATAGGTTTATTCCGAGTAGATCAGGTTCTAATTTCGCGCTGTTCGACATCTCTCCTTCAGCGAATTCTCCAGCGGATACACGCGAAGATAGCTCCAGTGCATATGCGACGCTTATTCGAACAGCCCTGTTTGGTCCCAATTCCGGAGTGGTTTCTCCGGCGACGCCAGAAAAGAGTAATATTTCGATGAATTTGCCCAACCAAAATATTTTTCGGTACAAAACAGAGACCCGTCGTTCTATGCAATCCCTCTCGCCCTTTGGTTTTGACGACGTAGTTCCGGGTGTTAATCATACTCCAGCAAAGGCACCTCGAAAGGTTACGCGTTCGCCTTATAAGGTTCTCGACGCGCCAGCATTGCAAGATGATTTTTATTTGAATCTTGTGGATTGGTCTGCCCATAATATTCTAGCTGTTGGCTTGGGTAACTGTGTTTATTTGTGGAATGCCTGTAGTAGCAAGGTAACAAAATTGTGCGACTTGGGAATTGATGACAGTGTCTGTTCAGTTGGTTGGGCTCATCGAGGAACTCATCTAGCTGTTGGGACTAGCACTGGCAAAGTTCAGATTTGGGATGCATCTCGCTGCAAAAGAATAAGAACAATGGAAGGTCATCGATTACGAGTTGGGGCTTTAGCTTGCAGTTCATCTTTTTTGACTTCTGGTAGCAGGGACAAAAGTATTCTCCAACGTGATATTCGTGCTCAGGAAGACTTTGTGAGTAAACTATCTGGGCACAAATCAGAGGTAAGTGACATATGGTTGTTTCAGGTTTGTGGATTGAAATGGTCTTATGATAACCGCGAGTTAGCATCGGGTGGTAATGACAACAGACTTTTCGTTTGGAATCAACATTCCACCCAACCTTTGCTTAAATATTGTGAGCATACGGCTGCAGTAAAAGCAATTGCATGGTCTCCCCATCTTCATGGGCTTCTTGCATCTGGGGGAGGGACAGCAGATAGATGTATACGTTTCTGGAACACAACAACAAACTCACAATTGAACTGCATCGACACAGGAAGTCAGGTTTGCAATCTTGTGTGGTCCAAGAATGTGAACGAACTGGTTAGCACCCATGGATATTCTCAAAATCAAATAATAGTTTGGAGATACCCAGCCATGTCAAAGTTGGCAACACTAACGGGCCATACATACCGAGTGCTTTATCTTGCCATCTCTCCTGATGGACAGACCATTGTTACTGGAGCTGGAGATGAGACACTTAGATTTTGGAACGTCTTCCCCTCCCTTAAATCTCAGAACACAGAAACTGAAATCGGAGCCTCATCTTTAGGAAGAACTACTATCCGATAA 1422 44.23 MSRNSSSFETLTPSRHIDRMINLNHRKSPSRAIYSDRFIPSRSGSNFALFDISPSANSPADTREDSSSAYATLIRTALFGPNSGVVSPATPEKSNISMNLPNQNIFRYKTETRRSMQSLSPFGFDDVVPGVNHTPAKAPRKVTRSPYKVLDAPALQDDFYLNLVDWSAHNILAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAHRGTHLAVGTSTGKVQIWDASRCKRIRTMEGHRLRVGALACSSSFLTSGSRDKSILQRDIRAQEDFVSKLSGHKSEVSDIWLFQVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPLLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPAMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSLKSQNTETEIGASSLGRTTIR 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5347735 5351031 - Bpe004050.1 Bpe11g00694 110839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00694 473 ProSitePatterns Trp-Asp (WD) repeats signature. 435 449 IPR019775 -
Bpe11g00694 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 449 IPR001680 GO:0005515
Bpe11g00694 473 PANTHER PROTEIN FIZZY-RELATED 1 14 473 - -
Bpe11g00694 473 SMART WD40_4 321 363 IPR001680 GO:0005515
Bpe11g00694 473 SMART WD40_4 409 448 IPR001680 GO:0005515
Bpe11g00694 473 SMART WD40_4 230 267 IPR001680 GO:0005515
Bpe11g00694 473 SMART WD40_4 143 184 IPR001680 GO:0005515
Bpe11g00694 473 SMART WD40_4 366 406 IPR001680 GO:0005515
Bpe11g00694 473 SMART WD40_4 271 318 IPR001680 GO:0005515
Bpe11g00694 473 SMART WD40_4 187 227 IPR001680 GO:0005515
Bpe11g00694 473 SUPERFAMILY WD40 repeat-like 156 449 IPR036322 GO:0005515
Bpe11g00694 473 Gene3D - 136 452 IPR015943 GO:0005515
Bpe11g00694 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 327 IPR001680 GO:0005515
Bpe11g00694 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 449 - -
Bpe11g00694 473 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 14 473 IPR033010 GO:0010997|GO:0097027|GO:1904668
Bpe11g00694 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 236 IPR001680 GO:0005515
Bpe11g00694 473 Pfam WD domain, G-beta repeat 275 318 IPR001680 GO:0005515
Bpe11g00694 473 Pfam WD domain, G-beta repeat 323 363 IPR001680 GO:0005515
Bpe11g00694 473 Pfam WD domain, G-beta repeat 412 448 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00694 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - mnt:21405920 840.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00694 Bpe-Chr11:5347735 Bpe15g01281 Bpe-Chr15:21186566 0 dispersed
Bpe11g00694 Bpe-Chr11:5347735 Bpe01g00404 Bpe-Chr1:2491027 8.30E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00694 Bpe_Chr11 FPKM 22.061098 28.039959 23.458353 27.133621 45.466446 48.489452 45.225735 26.369648 27.355951 26.33519