Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00695 ATGCCTCTTGGATCAACAGTAAATCGAAAGCGAGTTGGGATTGTCGGGCTCGGAAGGATCGGCTCTGAAATTGCAGTAAGACTCCAAGCTTTTGGCTGTAACATAGCTTACACTTCAAGAACAAAGAAGGAATCAATTCGCTACAGGTACTACGAAAATGTCTCTGACCTAGCAGCCAATACCGATGTGCTAATAATTTGTTGTGCTCTAACCGAACAAACATTCCACATTGTCGACGAAGTCGTTATTAAAGCTTTGGGAAAGGAAGGGGTGATAGTCAACGTCGGTCGGGGGGCTCTGGTAGACGAGAAGGCACTCGTTGGAGCATTGAAGGACAGAGAGATTAAGGGTGCAGGGTTTGATGTGTTCGAGGACGAGCCTAATGTGCCTCCACAACTACTCGAGATGGACAATGTGGTGTTGTCTCCTCATCGGGCTGTGCTCACTCCGCAATCTCTGGATGCAGTCGTCGATGTCGTTCTTGCCAATTTGGAGGCTTTCTTCTCAAATCGGCCTCTGCTTTCTGCTGTCCAACTTGAATGA 543 47.7 MPLGSTVNRKRVGIVGLGRIGSEIAVRLQAFGCNIAYTSRTKKESIRYRYYENVSDLAANTDVLIICCALTEQTFHIVDEVVIKALGKEGVIVNVGRGALVDEKALVGALKDREIKGAGFDVFEDEPNVPPQLLEMDNVVLSPHRAVLTPQSLDAVVDVVLANLEAFFSNRPLLSAVQLE 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5352874 5353617 - Bpe004051.1 Bpe11g00695 110840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00695 180 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 146 IPR036291 -
Bpe11g00695 180 Gene3D - 150 172 - -
Bpe11g00695 180 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 2 180 - -
Bpe11g00695 180 PANTHER GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE HPR3 2 180 - -
Bpe11g00695 180 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 4 146 IPR006140 GO:0051287
Bpe11g00695 180 Gene3D - 2 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00695 K15919 HPR2_3; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] - zju:107433558 232.646
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00695 Bpe-Chr11:5352874 Bpe13g00908 Bpe-Chr13:15093268 1.52E-71 dispersed
Bpe11g00695 Bpe-Chr11:5352874 Bpe10g00650 Bpe-Chr10:13166441 1.37E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g431 . . . . . . . Bma14g00574 Cmo06g01148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00695 . . . . . Cma06g01120 . . . Cpe08g00498 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000708 2 4 2 3 2 4 2 4 3 4 2 5 3 4 4 3 4 3 3 3 5 3 3 4 3 4 5 3 1 2 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00695 Bpe_Chr11 FPKM 1.21091 1.251612 1.227331 1.221749 2.859693 2.170482 1.799274 0.601613 0.673673 0.756478