Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00697 ATGACTCAGACCCGATTCTTTAGTTCCCAGAAGTTTAAACCGGACGAGGAAGCGGAACCCGCGACTAGCAGCGGCGGAGGAACGGCCATGAGAGTCATAGTGCCTTTACAAGGCGTGGTTCAAGGCAGAGGAGGTCTAGTTTTGGGCTCGGTTATACCTTGCGCGCTGTTTTACTTCCTACAGCTTTACATGAAACGGAATCGATCCGGGGGGAACTCTGCAACTCGTACGCAGTCTCCAGAACCAGAGGAGGGTTATCCGTCGACGACAAAATTTTCGGAGGTTGGTGCGATTCCTCGGACATTCTCTCGCACCCATCTCTCTCCGAGGTCGAGCGGGCCTACCTATGTCTCGGGTCGAGCTGGATTGGTTGATAGAAGTGAGGATTCAACTTACCAAGCAGGGTTAACCATGTCATTGGAGGATCCGTATGACGAGGTGAATAATCGGGATGGGATTATTCACCTTGGGTTAGGTGAAAACAAGTTGTGCTTGGACTTAGTTCGAGAATGGCTTGCGGAGAATGCGAGGGATGCCTTATTTGGGGGAGGAGATGGTGGGAAGATAAGTTTTGGAGCCACTGCTGCCTACCAGCCTTTTGATGGATTGATGGAGTTGAAAGTGGCTGTGACTGGATTCATGTCTCAAGTTATCGGAAACAATGGCTTCTTCAATCACTCGCAAATTATATTAACAGCTGGTGTGACCTCTGCCATTGAAATTCTTAGCTTCTGCTTAGCAGACGCCGGAAATGCTTTTCTGGTTCCTACACCGTTCTATCCCGGCTTTGAAAGTGACATAAAATGGCGGACAGGAGTGAAGATAGTGCCTGTTCCATGCTGGAGTACTGACAACTTCAAATTAAACATGACTTCTGTTGACGAGGCGTTTAACCAGGCTAAGAAACGAGGGCAAAAAGTCCGTGGAATCATAATTTCGACACCCTCAAACTTCGTTGGAAATATGCTTGATCGGGAAACGCTATACAGCCTTCTAGACTTTGCAAGAGATAAAAACATCCATATTGTCTCGAATGAAATGTTTGCAGGCTCTTGCTATGCAAGCGAAGAGTTTGTAAGTATGTTGGAGATTGTTGGGTCGGAAGATCTCGACAGGGACAGAGTTCATTTAGTCTACGATTTATCAAAAGAGCTCCCTCTTCCAGGTTTTCGAGTCGGTGCCATATACTCCTTCAACGAGAACGTTCTTTCTGCTGCGAAAAAACTGTCAAGATTCTCACCCGTCTCTGCTCCTACTCAGAGCCTGCTTATTTCTATGCTTTCTGATACAAACTTTGTGCAAAGATTGATAAAGAATTACAGAGAAAGGCTAGGAGAAATACATAGAAAAATGGTTGGAGGCTTGAGAGAACTCGGAATTGAATGTGGCAAAAGCAATGCAGGTGAGTATTGTTGGGTTAATTTGGGGAAATTTATTTGCTCGTATAGTGAAAAAGGTGAGCTTCAGCTCTGGGATAAGCTGTTGAATATGGCTCGAGTTAAGGTAATTCCTGGTTCTCTCTGTCACTGTATCGAACCGGGTTGGTACTTGTTGTGTTTTTCTAGTTTGGCTGATAATGAAATTCCAGTAACGTTGGAACGAATTCGGAAAATGATTACAGATGTGTATAATTCTTGA 1638 45.24 MTQTRFFSSQKFKPDEEAEPATSSGGGTAMRVIVPLQGVVQGRGGLVLGSVIPCALFYFLQLYMKRNRSGGNSATRTQSPEPEEGYPSTTKFSEVGAIPRTFSRTHLSPRSSGPTYVSGRAGLVDRSEDSTYQAGLTMSLEDPYDEVNNRDGIIHLGLGENKLCLDLVREWLAENARDALFGGGDGGKISFGATAAYQPFDGLMELKVAVTGFMSQVIGNNGFFNHSQIILTAGVTSAIEILSFCLADAGNAFLVPTPFYPGFESDIKWRTGVKIVPVPCWSTDNFKLNMTSVDEAFNQAKKRGQKVRGIIISTPSNFVGNMLDRETLYSLLDFARDKNIHIVSNEMFAGSCYASEEFVSMLEIVGSEDLDRDRVHLVYDLSKELPLPGFRVGAIYSFNENVLSAAKKLSRFSPVSAPTQSLLISMLSDTNFVQRLIKNYRERLGEIHRKMVGGLRELGIECGKSNAGEYCWVNLGKFICSYSEKGELQLWDKLLNMARVKVIPGSLCHCIEPGWYLLCFSSLADNEIPVTLERIRKMITDVYNS 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5365202 5367786 + Bpe004053.1 Bpe11g00697 110842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00697 545 Gene3D Aspartate Aminotransferase, domain 1 142 534 IPR015422 GO:0003824
Bpe11g00697 545 MobiDBLite consensus disorder prediction 69 92 - -
Bpe11g00697 545 CDD AAT_like 154 537 - -
Bpe11g00697 545 Pfam Aminotransferase class I and II 156 535 IPR004839 GO:0009058|GO:0030170
Bpe11g00697 545 Gene3D - 176 429 IPR015421 GO:0003824
Bpe11g00697 545 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 156 182 - -
Bpe11g00697 545 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 304 328 - -
Bpe11g00697 545 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 340 363 - -
Bpe11g00697 545 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 250 271 - -
Bpe11g00697 545 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 406 429 - -
Bpe11g00697 545 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 191 207 - -
Bpe11g00697 545 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 374 398 - -
Bpe11g00697 545 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 228 248 - -
Bpe11g00697 545 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 19 540 - -
Bpe11g00697 545 MobiDBLite consensus disorder prediction 1 28 - -
Bpe11g00697 545 PANTHER AMINOTRANSFERASE ACS12-RELATED 19 540 - -
Bpe11g00697 545 MobiDBLite consensus disorder prediction 69 86 - -
Bpe11g00697 545 SUPERFAMILY PLP-dependent transferases 141 539 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00697 K14270 ACS10_12; aminotransferase - fve:101307115 676.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00329 Bpe-Chr3:5194687 Bpe11g00697 Bpe-Chr11:5365202 5.62E-33 dispersed
Bpe11g00697 Bpe-Chr11:5365202 Bpe13g01262 Bpe-Chr13:17849599 3.58E-129 dispersed
Bpe11g00697 Bpe-Chr11:5365202 Bpe03g00099 Bpe-Chr3:1487039 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g453 . . . . . . . . . . . Cma15g01179 . Car15g01067 . . . . . . . . . . . . . . . . . . . . . . Csa05g00357 Chy09g01150 . Blo03g00382 . . . . Bpe11g00697 . . . . Cmo15g01239 . . . . . Cpe13g00195 Bhi12g00353 . . Lac11g2187 Hepe06g1617 . Lcy12g1741 Cla01g00335 Cam01g0348 Cec01g0344 Cco01g0356 Clacu01g0352 Cmu01g0332 Cre09g2178 Lsi09g00361 . . Cme09g01682
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002106 1 2 3 1 2 2 2 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 2 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00697 Bpe_Chr11 FPKM 14.599269 15.509144 0.188759 0.0 1.473512 1.027464 0.98759 0.0 0.0 0.0