Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00799 ATGGAGACCAGTGAAACAAATACTTCTACTTCATCAAACCCTGCAACTTCTTTATCGCCGGCATCATCGTCTTCTCCTTCACCTCCGGCGACTACTCCGGTCACGACCATGCATGTAATTCTCAGTCCTTGCGCAGCATGCAAGATTTTGCGGCGAAGATGCGCTGATAAATGTGTACTGGCGCCGTACTTCCCTCCCACCGAGCCCGCGAAGTTTACCATAGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAGTTTCTGCAGGCATATCAAAGGGCAGACGCAGTTAGCAGCATGGTGTATGAAGCAAGTGCGAGAATAAGAGATCCAGTTTACGGATGTGCAGGCGCCATTTGCCAACTTCAGAAGCAAGTGAACGAGCTTCAAGCCGAATTAGCAAAAACACAGGCCGAGCTCGTCAACATGCAGTGTCAACAGACCAATCTCGTCTCTGTCATTTGCAGAGAGTTTTCTCAGTCCTCTCAGCCATGGCCGAATGAGCATCAATCTATTGATAATTTCATTCAAAACGACCCTCATTCGTACGCGACGAACAACCCAAGCTTATTCGAAGACGGGTCTTTGTGGGAGCCTCTGTGGACTTGA 609 48.77 METSETNTSTSSNPATSLSPASSSSPSPPATTPVTTMHVILSPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQAYQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAELAKTQAELVNMQCQQTNLVSVICREFSQSSQPWPNEHQSIDNFIQNDPHSYATNNPSLFEDGSLWEPLWT 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5972106 5973182 + Bpe004147.1 Bpe11g00799 110944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00799 202 MobiDBLite consensus disorder prediction 1 32 - -
Bpe11g00799 202 ProSiteProfiles LOB domain profile. 42 140 IPR004883 -
Bpe11g00799 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 201 - -
Bpe11g00799 202 Coils Coil 119 146 - -
Bpe11g00799 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 29 201 - -
Bpe11g00799 202 Pfam Lateral organ boundaries (LOB) domain 43 137 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00658 Bpe-Chr8:6827231 Bpe11g00799 Bpe-Chr11:5972106 7.66E-59 dispersed
Bpe11g00799 Bpe-Chr11:5972106 Bpe15g01174 Bpe-Chr15:20604486 1.03E-47 dispersed
Bpe11g00799 Bpe-Chr11:5972106 Bpe15g01073 Bpe-Chr15:19963663 5.49E-70 wgd
Bpe11g00799 Bpe-Chr11:5972106 Bpe04g01869 Bpe-Chr4:23824443 4.69E-69 wgd
Bpe11g00799 Bpe-Chr11:5972106 Bpe08g01337 Bpe-Chr8:14548087 1.06E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22060 PF03195 LOB 1.70E-37 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00799 - - minc:123208287 266.929