Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00832 ATGATTCCGGAGGTAATATCGTGCTTCCCCGGCGCAGGTCAGGATCTACGAATCTACTCCATTTCAGAAGATCAGACGAACTCAAAAGCAGAAACTCATCACTCGAGCTCTCTCCTTTACAGTCTCTCTATTCTCAAAGACAAGGTTCATCAGGTCGAATCTGTAGTCACCCTCTTTCTCTCTCAAGATCAAGTAAATCCAGATTCATCTTCATTAGCAATCGCCAGCATAAACTCGCTGATTCAAGACGTCATCTTGACTGCTTCTTCCATGCTGTTAACTCCTCCAGAAACAGCTCCGTCTGGTTCTAACCCTTGTAATATGATCAACGTCGATGAATCAAACCCCTTCCAAGCAATTCATGGGAAAGAGTTCCATCCAAGTGAAACGATGTCACTTAACTGGTGCGCAACCGGAAGCTTCAGCAATGGCGGCCTAACAATTAACGGTCAGAATTACGATGAAAAGAAAGAAGAGCGTCAAAATCTTTCTCCTAAGAACGATGATATCATAGAATTTGATGTCGCACATCTATTAGCAAAGTACACCCATTATTGCCAAGTCTGCGGAAAAGGATTCAAACGTGATGCGAATTTAAGAATGCATATGAGAGCACATGGCGAAGAGTATAAAACCAGTGCAGCTTTAAGCAACCCAGCGAAAAACAACAAAGAGTGGAAGACGATAGAGGATTTTCCGGGAAAATTGCCGAGAAAATACTCATGTCCACAACAAGGGTGCAGGTGGAATCAAAAACATCCCAAGTTTCAGCCTCTTAAGTCGATGATTTGCTTGAAGAATCACTACAAGAGAAGCCATTGCCCTAAAATGTACGTCTGCAAGAGGTGCAACAGAAAGCAATTTTCAGTTCTGTCTGATCTGAGAACCCACGAGAAGCACTGCGGAGATCTGAAATGGCAGTGTTCTTGCGGAACTACGTTTTCCAGAAAAGATAAGTTAGTGTGTCACGTTGCTCTGTTTGTCGGTCATTCGCCATTGATGAGTTCTCGAAGGTCTGAGAGCCAAACAACTAATTTGCAGCCAGATAATGCATGA 1056 43.28 MIPEVISCFPGAGQDLRIYSISEDQTNSKAETHHSSSLLYSLSILKDKVHQVESVVTLFLSQDQVNPDSSSLAIASINSLIQDVILTASSMLLTPPETAPSGSNPCNMINVDESNPFQAIHGKEFHPSETMSLNWCATGSFSNGGLTINGQNYDEKKEERQNLSPKNDDIIEFDVAHLLAKYTHYCQVCGKGFKRDANLRMHMRAHGEEYKTSAALSNPAKNNKEWKTIEDFPGKLPRKYSCPQQGCRWNQKHPKFQPLKSMICLKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLVCHVALFVGHSPLMSSRRSESQTTNLQPDNA 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6202693 6203748 + Bpe004176.1 Bpe11g00832 110977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00832 351 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 23 343 IPR044300 GO:0010044|GO:0010447
Bpe11g00832 351 PANTHER OS08G0562300 PROTEIN 23 343 - -
Bpe11g00832 351 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Bpe11g00832 351 Gene3D Classic Zinc Finger 174 233 - -
Bpe11g00832 351 SMART c2h2final6 278 300 IPR013087 -
Bpe11g00832 351 SMART c2h2final6 184 206 IPR013087 -
Bpe11g00832 351 SMART c2h2final6 240 273 IPR013087 -
Bpe11g00832 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Bpe11g00832 351 SUPERFAMILY beta-beta-alpha zinc fingers 182 209 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe08g01298 Bpe11g00832 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00083 Bpe-Chr6:1141493 Bpe11g00832 Bpe-Chr11:6202693 2.04E-61 dispersed
Bpe11g00832 Bpe-Chr11:6202693 Bpe04g01583 Bpe-Chr4:22108697 8.77E-24 dispersed
Bpe13g01331 Bpe-Chr13:18557497 Bpe11g00832 Bpe-Chr11:6202693 1.33E-22 dispersed
Bpe11g00832 Bpe-Chr11:6202693 Bpe08g01298 Bpe-Chr8:14312392 3.28E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22065 None None None None Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00832 - - csin:114301238 383.645