Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00883 ATGGGTGTCTCAGGGAAATGGATAAAAGCACTGGTTGGTTTTAAAAAATCAGAAAAGTCGCGATCTTCAGAAAAAGATCACAATAAGACACCTGGGAGTAAGATCCGACATCATAGAAAGCACTCTCTCGAGTTTGATGCGGATAATCTTCAGTCCGAAATGGATCTAGATAGCACCTCATTAGTTGAGGATGCTAATGGTCATACTGATCGATATCCTGGTGGTTTGCCTTCAAATTCGCTTCAGTTACTTGGCATTTCACAGAGTCCTAAGAATGAAAGAGAAGAGTGGGCTGCTACACGAATCCAAACAACCTTTCGAGGATTTCTGGCCAGGAGAGCTCTCCGAGCTTTGAAAGGAGTAGTGAGACTTCAAGCTCTTGTCAGGGGTCATGCCGTTAGAAAGCAAGCTGCAATAACACTTCGATTTATGCAAGCTTTAGTGAGAGTTCAGGCTCAGGTCAGAGCAAGGCACGTTCGTCTCGCATTAGAAAGGGAAACATCTCAACAAAAGCTTCAACAACAACTTGAAAATCAGGGTCGTGTCAGAGAAATAGAGGAAGGGTGGTGTGACAGTGTAGGATCTGTTGAAGAAATTCAAGCCAAGTTGTTAAAGAGGCAGGAGGCTGCAGCCAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGACTGCTCTATCAGGGTTTGAACCAGATAAGAGCAGCTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTCCGGCCTTGGGAGAATCGTTTTCTTGACATTAATCTCCGAGATGGAGTGATGATACGAGAGGATGAATCTGCCGAGGCTAGACATAGCAGTGGATCTCAGTCAAAAGCTAGTGGAAAGAAGCCTCATTTTGCAGTTGTCTCGAACCAGAAAACCGCCCCTTCTAATTCCCAGGGCTCTAATTCTTTTCCCAGTAAATCCGAAGGCCAGCTAGAGTCAATGTGGCCCCAGAAATCAAAGTCTAAGCATTCTTATGAAAAGACAGCAGAAGAAGTCAAAAAAGCAGTAGTTGGATCAAGATCCCTCAGCAATCCGAAAGAGAGATCGCCTCCATTAGATAAACCTGCAGAAAAGCGGCTATCTCTGCCTAATATCAGAACTTCTAGCTCTGTTTCAGCAAGGAATTCCAGCCGACTAGGAGGAAAATCGAGCTCCGATTTCTCTTTAGGCCGGTCAAGTCTAAACTCGACAGAAAAGATGAAGGAAAATGGGGTAAAATCCTTCTCACCAGGTAATGCCTAA 1287 45.22 MGVSGKWIKALVGFKKSEKSRSSEKDHNKTPGSKIRHHRKHSLEFDADNLQSEMDLDSTSLVEDANGHTDRYPGGLPSNSLQLLGISQSPKNEREEWAATRIQTTFRGFLARRALRALKGVVRLQALVRGHAVRKQAAITLRFMQALVRVQAQVRARHVRLALERETSQQKLQQQLENQGRVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQTALSGFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIREDESAEARHSSGSQSKASGKKPHFAVVSNQKTAPSNSQGSNSFPSKSEGQLESMWPQKSKSKHSYEKTAEEVKKAVVGSRSLSNPKERSPPLDKPAEKRLSLPNIRTSSSVSARNSSRLGGKSSSDFSLGRSSLNSTEKMKENGVKSFSPGNA 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6512334 6516836 - Bpe004224.1 Bpe11g00883 111028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00883 428 PANTHER IQ-DOMAIN 5-RELATED 2 391 - -
Bpe11g00883 428 PANTHER IQ-DOMAIN 5-RELATED 2 391 - -
Bpe11g00883 428 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Bpe11g00883 428 MobiDBLite consensus disorder prediction 15 41 - -
Bpe11g00883 428 MobiDBLite consensus disorder prediction 15 31 - -
Bpe11g00883 428 Pfam IQ calmodulin-binding motif 119 136 IPR000048 GO:0005515
Bpe11g00883 428 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515
Bpe11g00883 428 MobiDBLite consensus disorder prediction 377 428 - -
Bpe11g00883 428 MobiDBLite consensus disorder prediction 279 428 - -
Bpe11g00883 428 MobiDBLite consensus disorder prediction 303 333 - -
Bpe11g00883 428 Gene3D - 92 143 - -
Bpe11g00883 428 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
Bpe11g00883 428 MobiDBLite consensus disorder prediction 334 349 - -
Bpe11g00883 428 SMART iq_5 94 116 IPR000048 GO:0005515
Bpe11g00883 428 SMART iq_5 117 138 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00883 - - - pvy:116125522 463.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00361 Bpe-Chr2:2360978 Bpe11g00883 Bpe-Chr11:6512334 6.02E-20 dispersed
Bpe03g00191 Bpe-Chr3:2304893 Bpe11g00883 Bpe-Chr11:6512334 1.11E-37 dispersed
Bpe03g00849 Bpe-Chr3:28308222 Bpe11g00883 Bpe-Chr11:6512334 1.16E-43 dispersed
Bpe04g01873 Bpe-Chr4:23845940 Bpe11g00883 Bpe-Chr11:6512334 5.82E-46 dispersed
Bpe06g00782 Bpe-Chr6:18055828 Bpe11g00883 Bpe-Chr11:6512334 8.76E-27 dispersed
Bpe11g00883 Bpe-Chr11:6512334 Bpe14g00783 Bpe-Chr14:5953139 6.07E-30 dispersed
Bpe13g00809 Bpe-Chr13:14430779 Bpe11g00883 Bpe-Chr11:6512334 7.36E-20 dispersed
Bpe15g00491 Bpe-Chr15:16173800 Bpe11g00883 Bpe-Chr11:6512334 2.35E-18 dispersed
Bpe11g00883 Bpe-Chr11:6512334 Bpe02g00495 Bpe-Chr2:3201970 4.06E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g808 Blo03g01027 . . . . . Bma14g00379 Bma07g01423 Cmo10g00895 Cmo11g00931 Cma10g00857 . . . . . Cpe18g00165 . . . . . . . . . . . . . . . Cone5ag1312 Cone18ag0162 Cone11ag1428 Lsi06g00645 . . . . . . Bda09g00275 . Bpe11g00883 . Bma11g00338 . . . Cma11g00912 . . . . . . . . . . . . Cla03g01384 Cam03g1463 Cec03g1500 Cco03g1495 Clacu03g1486 Cmu03g2044 Cre03g1715 . Csa01g03281 Chy02g01601 Cme02g00846
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01589 . 1 463 IQD Protein Family AT5G03040 51.2 1.2e-106 383.6
Bpe04g01873 . 1 462 IQD Protein Family AT3G52290 52.6 3.5e-95 345.5
Bpe11g00883 . 1 379 IQD Protein Family AT3G22190 58.5 1.3e-94 343.6
Bpe02g00495 . 1 438 IQD Protein Family AT2G26180 59.5 2.7e-116 415.6
Bpe04g00122 . 1 274 IQD Protein Family AT2G26180 65.2 2.4e-77 286.2
Bpe01g00879 . 33 252 IQD Protein Family AT2G33990 57.2 2.7e-58 222.2
Bpe03g00849 . 66 242 IQD Protein Family AT2G33990 52.0 2.7e-45 179.1
Bpe01g00879 . 24 225 IQD Protein Family AT3G15050 52.8 4.9e-52 201.4
Bpe14g00783 . 3 500 IQD Protein Family AT4G00820 50.4 6.2e-110 394.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00883 Bpe_Chr11 FPKM 11.052117 10.528574 8.23701 9.566432 13.490546 10.803164 13.420065 11.515248 10.911459 11.407952