Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00900 ATGTGCCATGAAGAAGACGACGACGAAGCTTCAACAATGGCGATCCCAGATTACAAAACGAACCCGAAATTCGGAGATTTTTTACGTTCGGAAGATGCGTATTGTGCTACTCCTCCGAACAAACGTCCCCGGCACGAGAATTGCGACCCGTTCGGGAAATTCAAAGGCGTCGTTATGCAGCAAAATGGGCATTGGGGAGCACAAATTTACGCGAATCATCAGAGAATTTGGCTCGGAACGTTTAAGTCGGAGAAAGAGGCGGCGATGGCGTACGATAGTGCGGCCATAAAGCTCCGAAACGGAGTCGACTCCCACCGGAATTTCCCTTGGACCGATCACAGCATGAAGGAGCCTAGTTTTCAAAACCAATTCAGCAAAGACGACGTGCTGAAAATGATCAGAGATGGTTCTTATTCGTCAAAGTTTGATGCATTTCTGAAAGAAAAGTCTCAAACTGAAGAGATTGGATTGGGTTCGAAGCAAATAACAATGAATTTATGCGACGGCAAATGTTCAAAAATCAAACTTTTTCAGAAGGAGCTGACTCCAAGTGACGTCGGAAAGCTCAACAGGCTCGTCATCCCGAAGAAAAACGCGACGAAATATTTTCCGTTCATCCGCGAAAACGACGACAACGACGTCGAGCTAGTTTTCTACGATAAGTTGATGAAGATTTGGAAATTCAGATACTGTTATTGGAAAAGTAGCCAGAGCTTCGTGTTCACGAGGGGCTGGAATAGGTTTGTGAAGGAGAAGAAGTTGAAGGAGAAGGACATAGTATCGTTTTACTCGTGCGAAGAAGGCCAAAACAGCGAAGAAAATGGCTTCTCTTTCTGCTTGATCGACATAGTTTACAGCAAAGAAAGAGAAACCGGAGGTGAAACCTGTTTGGCTGCCGAGAAAATTTGCAGCGAGACGAAGAACGTGGGATTGGAGCTGCACTTGGGGAATTTTCTCAGATTCAAACTGGACGGGAAAGAGAAGGAAAATGTTTTTGATGGGATGTATTCGATTCCAACTCGGGTTGAAGAGAAGGGTTTTAGGCTATTTGGAGTGCAAATCACCCGATTTAATACTTAG 1080 44.81 MCHEEDDDEASTMAIPDYKTNPKFGDFLRSEDAYCATPPNKRPRHENCDPFGKFKGVVMQQNGHWGAQIYANHQRIWLGTFKSEKEAAMAYDSAAIKLRNGVDSHRNFPWTDHSMKEPSFQNQFSKDDVLKMIRDGSYSSKFDAFLKEKSQTEEIGLGSKQITMNLCDGKCSKIKLFQKELTPSDVGKLNRLVIPKKNATKYFPFIRENDDNDVELVFYDKLMKIWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKEKDIVSFYSCEEGQNSEENGFSFCLIDIVYSKERETGGETCLAAEKICSETKNVGLELHLGNFLRFKLDGKEKENVFDGMYSIPTRVEEKGFRLFGVQITRFNT 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6679200 6680279 + Bpe004240.1 Bpe11g00900 111045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00900 359 Gene3D - 171 287 IPR015300 -
Bpe11g00900 359 ProSiteProfiles AP2/ERF domain profile. 53 109 IPR001471 GO:0003700|GO:0006355
Bpe11g00900 359 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 355 IPR044800 GO:0003700
Bpe11g00900 359 SMART rav1_2 53 115 IPR001471 GO:0003700|GO:0006355
Bpe11g00900 359 CDD B3_DNA 175 263 IPR003340 GO:0003677
Bpe11g00900 359 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
Bpe11g00900 359 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Bpe11g00900 359 Pfam AP2 domain 53 100 IPR001471 GO:0003700|GO:0006355
Bpe11g00900 359 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 35 355 - -
Bpe11g00900 359 ProSiteProfiles B3 DNA-binding domain profile. 177 284 IPR003340 GO:0003677
Bpe11g00900 359 Gene3D AP2/ERF domain 53 110 IPR036955 GO:0003700|GO:0006355
Bpe11g00900 359 Pfam B3 DNA binding domain 177 266 IPR003340 GO:0003677
Bpe11g00900 359 SMART B3_2 177 273 IPR003340 GO:0003677
Bpe11g00900 359 SUPERFAMILY DNA-binding pseudobarrel domain 172 268 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00642 Bpe-Chr1:4328387 Bpe11g00900 Bpe-Chr11:6679200 3.12E-89 dispersed
Bpe10g00947 Bpe-Chr10:15006814 Bpe11g00900 Bpe-Chr11:6679200 8.97E-54 dispersed
Bpe11g00900 Bpe-Chr11:6679200 Bpe13g00799 Bpe-Chr13:14351945 3.39E-29 dispersed
Bpe11g00900 Bpe-Chr11:6679200 Bpe11g01690 Bpe-Chr11:13188925 1.38E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22069 PF02362 B3 4.30E-24 CL0405 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00900 K09287 - qsu:111998385 373.629