Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00900 ATGTGCCATGAAGAAGACGACGACGAAGCTTCAACAATGGCGATCCCAGATTACAAAACGAACCCGAAATTCGGAGATTTTTTACGTTCGGAAGATGCGTATTGTGCTACTCCTCCGAACAAACGTCCCCGGCACGAGAATTGCGACCCGTTCGGGAAATTCAAAGGCGTCGTTATGCAGCAAAATGGGCATTGGGGAGCACAAATTTACGCGAATCATCAGAGAATTTGGCTCGGAACGTTTAAGTCGGAGAAAGAGGCGGCGATGGCGTACGATAGTGCGGCCATAAAGCTCCGAAACGGAGTCGACTCCCACCGGAATTTCCCTTGGACCGATCACAGCATGAAGGAGCCTAGTTTTCAAAACCAATTCAGCAAAGACGACGTGCTGAAAATGATCAGAGATGGTTCTTATTCGTCAAAGTTTGATGCATTTCTGAAAGAAAAGTCTCAAACTGAAGAGATTGGATTGGGTTCGAAGCAAATAACAATGAATTTATGCGACGGCAAATGTTCAAAAATCAAACTTTTTCAGAAGGAGCTGACTCCAAGTGACGTCGGAAAGCTCAACAGGCTCGTCATCCCGAAGAAAAACGCGACGAAATATTTTCCGTTCATCCGCGAAAACGACGACAACGACGTCGAGCTAGTTTTCTACGATAAGTTGATGAAGATTTGGAAATTCAGATACTGTTATTGGAAAAGTAGCCAGAGCTTCGTGTTCACGAGGGGCTGGAATAGGTTTGTGAAGGAGAAGAAGTTGAAGGAGAAGGACATAGTATCGTTTTACTCGTGCGAAGAAGGCCAAAACAGCGAAGAAAATGGCTTCTCTTTCTGCTTGATCGACATAGTTTACAGCAAAGAAAGAGAAACCGGAGGTGAAACCTGTTTGGCTGCCGAGAAAATTTGCAGCGAGACGAAGAACGTGGGATTGGAGCTGCACTTGGGGAATTTTCTCAGATTCAAACTGGACGGGAAAGAGAAGGAAAATGTTTTTGATGGGATGTATTCGATTCCAACTCGGGTTGAAGAGAAGGGTTTTAGGCTATTTGGAGTGCAAATCACCCGATTTAATACTTAG 1080 44.81 MCHEEDDDEASTMAIPDYKTNPKFGDFLRSEDAYCATPPNKRPRHENCDPFGKFKGVVMQQNGHWGAQIYANHQRIWLGTFKSEKEAAMAYDSAAIKLRNGVDSHRNFPWTDHSMKEPSFQNQFSKDDVLKMIRDGSYSSKFDAFLKEKSQTEEIGLGSKQITMNLCDGKCSKIKLFQKELTPSDVGKLNRLVIPKKNATKYFPFIRENDDNDVELVFYDKLMKIWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKEKDIVSFYSCEEGQNSEENGFSFCLIDIVYSKERETGGETCLAAEKICSETKNVGLELHLGNFLRFKLDGKEKENVFDGMYSIPTRVEEKGFRLFGVQITRFNT 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6679200 6680279 + Bpe004240.1 Bpe11g00900 111045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00900 359 Gene3D - 171 287 IPR015300 -
Bpe11g00900 359 ProSiteProfiles AP2/ERF domain profile. 53 109 IPR001471 GO:0003700|GO:0006355
Bpe11g00900 359 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 355 IPR044800 GO:0003700
Bpe11g00900 359 SMART rav1_2 53 115 IPR001471 GO:0003700|GO:0006355
Bpe11g00900 359 CDD B3_DNA 175 263 IPR003340 GO:0003677
Bpe11g00900 359 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
Bpe11g00900 359 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Bpe11g00900 359 Pfam AP2 domain 53 100 IPR001471 GO:0003700|GO:0006355
Bpe11g00900 359 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 35 355 - -
Bpe11g00900 359 ProSiteProfiles B3 DNA-binding domain profile. 177 284 IPR003340 GO:0003677
Bpe11g00900 359 Gene3D AP2/ERF domain 53 110 IPR036955 GO:0003700|GO:0006355
Bpe11g00900 359 Pfam B3 DNA binding domain 177 266 IPR003340 GO:0003677
Bpe11g00900 359 SMART B3_2 177 273 IPR003340 GO:0003677
Bpe11g00900 359 SUPERFAMILY DNA-binding pseudobarrel domain 172 268 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00900 K09287 RAV; RAV-like factor - qsu:111998385 373.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00642 Bpe-Chr1:4328387 Bpe11g00900 Bpe-Chr11:6679200 3.12E-89 dispersed
Bpe10g00947 Bpe-Chr10:15006814 Bpe11g00900 Bpe-Chr11:6679200 8.97E-54 dispersed
Bpe11g00900 Bpe-Chr11:6679200 Bpe13g00799 Bpe-Chr13:14351945 3.39E-29 dispersed
Bpe11g00900 Bpe-Chr11:6679200 Bpe11g01690 Bpe-Chr11:13188925 1.38E-54 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01510 . 66 182 RAV Transcription Factor Family AT2G36080 76.3 3.4e-49 191.4
Bpe11g00381 BCT 93 205 RAV Transcription Factor Family AT2G36080 69.0 1.5e-41 166.0
Bpe04g00972 BCT 109 231 RAV Transcription Factor Family AT2G36080 64.3 7.6e-41 163.7
Bpe08g00913 BCT 86 198 RAV Transcription Factor Family AT2G36080 68.1 1.7e-40 162.5
Bpe02g02282 BCT,CCT,ECH 178 288 RAV Transcription Factor Family AT2G36080 63.4 3.9e-37 151.4
Bpe04g00972 BCT 83 339 RAV Transcription Factor Family AT2G46870 50.9 1.7e-59 226.5
Bpe11g00381 BCT 93 344 RAV Transcription Factor Family AT2G46870 50.2 3.9e-56 215.3
Bpe04g01510 . 63 176 RAV Transcription Factor Family AT2G46870 69.2 3.2e-42 169.1
Bpe11g01690 BCT,CCT,ECH 186 296 RAV Transcription Factor Family AT2G46870 65.8 6.3e-38 154.8
Bpe10g00947 CCT,ECH 191 299 RAV Transcription Factor Family AT2G46870 67.9 8.3e-38 154.5
Bpe04g01510 . 67 213 RAV Transcription Factor Family AT3G11580 61.6 3.8e-48 188.3
Bpe04g00972 BCT 108 226 RAV Transcription Factor Family AT3G11580 61.5 5.9e-41 164.5
Bpe11g00381 BCT 93 258 RAV Transcription Factor Family AT3G11580 50.6 8.6e-40 160.6
Bpe08g00913 BCT 86 209 RAV Transcription Factor Family AT3G11580 58.5 1.1e-39 160.2
Bpe08g00913 BCT 81 214 RAV Transcription Factor Family AT3G61970 73.9 2.1e-54 209.5
Bpe04g00972 BCT 109 339 RAV Transcription Factor Family AT3G61970 52.5 6.7e-53 204.5
Bpe10g00947 CCT,ECH 187 299 RAV Transcription Factor Family AT3G61970 67.0 1.2e-38 157.1
Bpe11g01690 BCT,CCT,ECH 188 296 RAV Transcription Factor Family AT3G61970 66.7 1.4e-37 153.7
Bpe02g02282 BCT,CCT,ECH 180 292 RAV Transcription Factor Family AT3G61970 64.9 1.8e-37 153.3
Bpe04g01510 . 61 262 RAV Transcription Factor Family AT5G06250 53.6 8.7e-52 200.7
Bpe08g00913 BCT 87 195 RAV Transcription Factor Family AT5G06250 67.2 9.0e-41 164.1
Bpe04g00972 BCT 110 218 RAV Transcription Factor Family AT5G06250 66.4 1.2e-40 163.7
Bpe11g00381 BCT 94 202 RAV Transcription Factor Family AT5G06250 66.4 2.6e-40 162.5
Bpe02g02282 BCT,CCT,ECH 174 288 RAV Transcription Factor Family AT5G06250 60.5 6.0e-37 151.4
Bpe11g00900 . 53 354 RAV Transcription Factor Family AT1G50680 50.9 1.7e-76 283.1
Bpe11g00900 . 53 354 RAV Transcription Factor Family AT1G51120 51.7 3.5e-77 285.4
Bpe10g00947 CCT,ECH 1 370 RAV Transcription Factor Family AT1G13260 61.5 1.3e-111 399.8
Bpe11g01690 BCT,CCT,ECH 1 369 RAV Transcription Factor Family AT1G13260 62.7 4.5e-109 391.3
Bpe02g02282 BCT,CCT,ECH 1 340 RAV Transcription Factor Family AT1G13260 60.7 2.4e-102 369.0
Bpe08g00913 BCT 88 206 RAV Transcription Factor Family AT1G13260 66.7 8.3e-39 157.9
Bpe11g00381 BCT 95 202 RAV Transcription Factor Family AT1G13260 72.5 1.1e-38 157.5
Bpe04g01510 . 68 183 RAV Transcription Factor Family AT1G13260 65.5 1.4e-38 157.1
Bpe04g00972 BCT 106 231 RAV Transcription Factor Family AT1G13260 62.2 2.4e-38 156.4
Bpe10g00947 CCT,ECH 26 325 RAV Transcription Factor Family AT3G25730 66.4 1.3e-102 369.8
Bpe02g02282 BCT,CCT,ECH 4 303 RAV Transcription Factor Family AT3G25730 66.0 1.1e-99 360.1
Bpe11g01690 BCT,CCT,ECH 4 324 RAV Transcription Factor Family AT3G25730 62.9 3.1e-99 358.6
Bpe04g01510 . 68 183 RAV Transcription Factor Family AT3G25730 62.4 5.8e-37 151.8
Bpe11g01690 BCT,CCT,ECH 1 370 RAV Transcription Factor Family AT1G68840 60.9 1.5e-112 402.9
Bpe10g00947 CCT,ECH 1 371 RAV Transcription Factor Family AT1G68840 60.7 2.2e-111 399.1
Bpe02g02282 BCT,CCT,ECH 1 343 RAV Transcription Factor Family AT1G68840 58.9 4.1e-102 368.2
Bpe08g00913 BCT 87 210 RAV Transcription Factor Family AT1G68840 62.7 2.9e-39 159.5
Bpe11g00381 BCT 94 207 RAV Transcription Factor Family AT1G68840 68.1 5.0e-39 158.7
Bpe04g01510 . 67 175 RAV Transcription Factor Family AT1G68840 68.8 4.2e-38 155.6
Bpe10g00947 CCT,ECH 26 325 RAV Transcription Factor Family AT3G25730 66.4 1.3e-102 369.8
Bpe02g02282 BCT,CCT,ECH 4 303 RAV Transcription Factor Family AT3G25730 66.0 1.1e-99 360.1
Bpe11g01690 BCT,CCT,ECH 4 324 RAV Transcription Factor Family AT3G25730 62.9 3.1e-99 358.6
Bpe04g01510 . 68 183 RAV Transcription Factor Family AT3G25730 62.4 5.8e-37 151.8
Bpe11g00900 . 53 354 RAV Transcription Factor Family AT1G51120 51.7 3.5e-77 285.4
Bpe04g01510 . 67 213 RAV Transcription Factor Family AT3G11580 61.6 3.8e-48 188.3
Bpe04g00972 BCT 108 226 RAV Transcription Factor Family AT3G11580 61.5 5.9e-41 164.5
Bpe11g00381 BCT 93 258 RAV Transcription Factor Family AT3G11580 50.6 8.6e-40 160.6
Bpe08g00913 BCT 86 209 RAV Transcription Factor Family AT3G11580 58.5 1.1e-39 160.2
Bpe04g01510 . 66 182 RAV Transcription Factor Family AT2G36080 76.3 3.4e-49 191.4
Bpe11g00381 BCT 93 205 RAV Transcription Factor Family AT2G36080 69.0 1.5e-41 166.0
Bpe04g00972 BCT 109 231 RAV Transcription Factor Family AT2G36080 64.3 7.6e-41 163.7
Bpe08g00913 BCT 86 198 RAV Transcription Factor Family AT2G36080 68.1 1.7e-40 162.5
Bpe02g02282 BCT,CCT,ECH 178 288 RAV Transcription Factor Family AT2G36080 63.4 3.9e-37 151.4
Bpe04g01510 . 61 262 RAV Transcription Factor Family AT5G06250 53.6 8.7e-52 200.7
Bpe08g00913 BCT 87 195 RAV Transcription Factor Family AT5G06250 67.2 9.0e-41 164.1
Bpe04g00972 BCT 110 218 RAV Transcription Factor Family AT5G06250 66.4 1.2e-40 163.7
Bpe11g00381 BCT 94 202 RAV Transcription Factor Family AT5G06250 66.4 2.6e-40 162.5
Bpe02g02282 BCT,CCT,ECH 174 288 RAV Transcription Factor Family AT5G06250 60.5 6.0e-37 151.4
Bpe04g00972 BCT 83 339 RAV Transcription Factor Family AT2G46870 50.9 1.7e-59 226.5
Bpe11g00381 BCT 93 344 RAV Transcription Factor Family AT2G46870 50.2 3.9e-56 215.3
Bpe04g01510 . 63 176 RAV Transcription Factor Family AT2G46870 69.2 3.2e-42 169.1
Bpe11g01690 BCT,CCT,ECH 186 296 RAV Transcription Factor Family AT2G46870 65.8 6.3e-38 154.8
Bpe10g00947 CCT,ECH 191 299 RAV Transcription Factor Family AT2G46870 67.9 8.3e-38 154.5
Bpe11g00900 . 53 354 RAV Transcription Factor Family AT1G50680 50.9 1.7e-76 283.1
Bpe08g00913 BCT 81 214 RAV Transcription Factor Family AT3G61970 73.9 2.1e-54 209.5
Bpe04g00972 BCT 109 339 RAV Transcription Factor Family AT3G61970 52.5 6.7e-53 204.5
Bpe10g00947 CCT,ECH 187 299 RAV Transcription Factor Family AT3G61970 67.0 1.2e-38 157.1
Bpe11g01690 BCT,CCT,ECH 188 296 RAV Transcription Factor Family AT3G61970 66.7 1.4e-37 153.7
Bpe02g02282 BCT,CCT,ECH 180 292 RAV Transcription Factor Family AT3G61970 64.9 1.8e-37 153.3
Bpe10g00947 CCT,ECH 1 370 RAV Transcription Factor Family AT1G13260 61.5 1.3e-111 399.8
Bpe11g01690 BCT,CCT,ECH 1 369 RAV Transcription Factor Family AT1G13260 62.7 4.5e-109 391.3
Bpe02g02282 BCT,CCT,ECH 1 340 RAV Transcription Factor Family AT1G13260 60.7 2.4e-102 369.0
Bpe08g00913 BCT 88 206 RAV Transcription Factor Family AT1G13260 66.7 8.3e-39 157.9
Bpe11g00381 BCT 95 202 RAV Transcription Factor Family AT1G13260 72.5 1.1e-38 157.5
Bpe04g01510 . 68 183 RAV Transcription Factor Family AT1G13260 65.5 1.4e-38 157.1
Bpe04g00972 BCT 106 231 RAV Transcription Factor Family AT1G13260 62.2 2.4e-38 156.4
Bpe11g01690 BCT,CCT,ECH 1 370 RAV Transcription Factor Family AT1G68840 60.9 1.5e-112 402.9
Bpe10g00947 CCT,ECH 1 371 RAV Transcription Factor Family AT1G68840 60.7 2.2e-111 399.1
Bpe02g02282 BCT,CCT,ECH 1 343 RAV Transcription Factor Family AT1G68840 58.9 4.1e-102 368.2
Bpe08g00913 BCT 87 210 RAV Transcription Factor Family AT1G68840 62.7 2.9e-39 159.5
Bpe11g00381 BCT 94 207 RAV Transcription Factor Family AT1G68840 68.1 5.0e-39 158.7
Bpe04g01510 . 67 175 RAV Transcription Factor Family AT1G68840 68.8 4.2e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22069 PF02362 B3 4.30E-24 CL0405 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00900 Bpe_Chr11 FPKM 3.256729 3.618895 19.61302 22.877337 3.395421 2.505578 3.280552 33.744904 35.318516 38.247494