Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00907 ATGTTCGATAGGAAGTCTAACGAAGTTATTTTAATGGAGAGCCTGATGATGGTCGAGGAAACATTGGGTGACTGTTCAGATTTAGATGTTGACGACATAAGATGTGAAAACATAGAGGACAAAGATGTTAGTGATGAAGAAATCGAAGCAGAAGAATTGGAGAGACGAATGTGGAAGGATCGTATTAAACTCAAAAGGATCAAGGAGAAGCAAAAGCTTGCAGCCCAACAAGCTGCTGAAAAGCTAAAGCCTAAGCAAGCTACTGACCAGGCTCGTAGAAAGAAAATGTCTCGAGCTCAAGATGGGATCCTCAAGTATATGTTGAAGCTGATGGAAGTGTGCAAGGCTCGTGGATTCGTGTATGGTATAATTCCCGAGAAGGGAAAACCAGTTAGCGGTTCTTCCGATAACATTAGAGCTTGGTGGAAAGAAAAGGTTAAATTTGACAAAAATGGCCCTGCAGCCATAGCCAAGTACGAAGCCGATTGTCTTGCAAGAGGGGAAGCAGATAACAGGGGAAATGGAAACTCGCAGAGTATTCTCCAAGATCTACAAGATGCAACTCTAGGTTCTCTTTTATCTTCCTTGATGCAACATTGTGACCCCCCTCAGCGGAAGTACCCTTTAGAAAAGCAAGTTCCACCGCCATGGTGGCCAAACGGGAACGAAGATTGGTGGGTTAAAATCGGTCTACCCCATGGCCAGAGTCCTCCGTATAAAAAGCCTCACGATTTGAAGAAAATATGGAAAGTTGGTGTTTTGACAGCTGTGATAAAGCATATGTCACCCAATATTGCGAAAATTAGGAGACATGTTCGACAGTCGAAGTGCTTGCAAGACAAGATGACGGCAAAGGAGAGTGCAATTTGGTTGGGGGTTTTGAAACGAGAGGAATCGCTCATTCAGCAGCTGAGCAGTGACAATGGGATGTCTGGAATCACAGAAACTCCTGCAGGAGGATGTGTTGATAAGCAAGTGGCAGCAATCAGTGGAAGTGATTATGATGTCGATGGTGTGGATGACTGCATGGCTTCAGTGTCATCCAAAGCTGAGAGGAGAAATGATGCTCAACCGTTGAGCTGTCTACCCATAACCACTTCTTATCCTGTCGAAGAAGAAGATCAAGCCGGAAAGAAATCTGGAACAAAAAGGGCTCGTACACAAGCAAATTCTCCGCCATTGACATCCGAAAATGAGCAACTAAATGTTGAGCCAAGAACCATCCTACCCGACATAAATAACTCAGATTTTCCATTGGTGGGATTCGATATTCCGGGAGTTCAGCTGGCAAGAGAGGCAGCCACTACAGCTTTGAGGTCGCTCGAGAGGGATTCAAGCTCCCAATCTCAACTACCAGATTTAGAATACAACCATTTCTCTTCGGTAGCATCGGAAAACGTTTCTACAGAAAATATATACGGGGGTGGAAGGTCCTTGACATATCCTGTGACGCAAAATTTGGAGATCAATCACGGAAATATGTACAATTTCTATAGTCCAACAGTGGAGTATAGGCCTAGTCACTATGGGCAGCAACCTAAGATTACTACTCAAATTGTGCAAGAGGATGAGGGATGCAGTGTACCTTCTCTACATAGTAATCCAAACGAGATCAGCGGAGTAGACTTCAACTATTATGCAAAAGACCCGTTGCCAGGCGAACAAAATAGGCCTGGTGATGCACAGTTTGGATCTCCGGGCCACAACTTATCGTTAGATTATGGAGCGTTAAACAGTCCATTCGACCTCGGGATTGACGGGATGGGGTCGTTTGATGATCTTTTACTCGACGATGATTTGATTCAATACTTTGGAGCATAG 1821 44.37 MFDRKSNEVILMESLMMVEETLGDCSDLDVDDIRCENIEDKDVSDEEIEAEELERRMWKDRIKLKRIKEKQKLAAQQAAEKLKPKQATDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVKFDKNGPAAIAKYEADCLARGEADNRGNGNSQSILQDLQDATLGSLLSSLMQHCDPPQRKYPLEKQVPPPWWPNGNEDWWVKIGLPHGQSPPYKKPHDLKKIWKVGVLTAVIKHMSPNIAKIRRHVRQSKCLQDKMTAKESAIWLGVLKREESLIQQLSSDNGMSGITETPAGGCVDKQVAAISGSDYDVDGVDDCMASVSSKAERRNDAQPLSCLPITTSYPVEEEDQAGKKSGTKRARTQANSPPLTSENEQLNVEPRTILPDINNSDFPLVGFDIPGVQLAREAATTALRSLERDSSSQSQLPDLEYNHFSSVASENVSTENIYGGGRSLTYPVTQNLEINHGNMYNFYSPTVEYRPSHYGQQPKITTQIVQEDEGCSVPSLHSNPNEISGVDFNYYAKDPLPGEQNRPGDAQFGSPGHNLSLDYGALNSPFDLGIDGMGSFDDLLLDDDLIQYFGA 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6724451 6726721 + Bpe004247.1 Bpe11g00907 111052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00907 606 MobiDBLite consensus disorder prediction 350 364 - -
Bpe11g00907 606 SUPERFAMILY DNA-binding domain of EIN3-like 179 301 IPR023278 GO:0003700|GO:0005634
Bpe11g00907 606 MobiDBLite consensus disorder prediction 382 398 - -
Bpe11g00907 606 MobiDBLite consensus disorder prediction 348 398 - -
Bpe11g00907 606 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 12 605 IPR006957 GO:0005634
Bpe11g00907 606 Pfam Ethylene insensitive 3 51 298 IPR006957 GO:0005634
Bpe11g00907 606 Coils Coil 50 70 - -
Bpe11g00907 606 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 12 605 - -
Bpe11g00907 606 Gene3D - 171 309 IPR023278 GO:0003700|GO:0005634
Bpe11g00907 606 Gene3D - 85 161 IPR023278 GO:0003700|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00907 K14514 EIN3; ethylene-insensitive protein 3 - csv:101210347 760.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00907 Bpe-Chr11:6724451 Bpe11g00969 Bpe-Chr11:7213564 5.04E-54 dispersed
Bpe11g00907 Bpe-Chr11:6724451 Bpe08g01163 Bpe-Chr8:13394047 8.18E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g153 Blo03g00996 . . . . . Bma14g00784 . . Cmo11g00844 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00508 . . . . . Bda07g00734 . . Bpe11g00907 . . . . . Cma11g00834 . . . . Cpe04g00932 . . . . . . . Cla03g01291 Cam03g1360 Cec03g1399 Cco03g1385 Clacu03g1384 Cmu03g1950 Cre03g1623 . Csa01g03142 Chy02g01432 Cme02g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g01163 . 2 607 EIL Transcription Factor Family AT2G27050 59.5 1.5e-189 659.4
Bpe11g00907 . 57 340 EIL Transcription Factor Family AT2G27050 59.9 2.6e-93 339.7
Bpe04g01634 . 8 172 EIL Transcription Factor Family AT5G21120 51.7 8.9e-37 151.8
Bpe11g00907 . 57 582 EIL Transcription Factor Family AT1G73730 53.4 2.8e-137 485.7
Bpe08g01163 . 41 300 EIL Transcription Factor Family AT1G73730 67.9 4.7e-100 362.1
Bpe11g00969 . 40 192 EIL Transcription Factor Family AT1G73730 58.7 3.1e-43 173.3
Bpe04g01634 . 29 150 EIL Transcription Factor Family AT1G73730 64.3 3.2e-40 163.3
Bpe08g01163 . 3 607 EIL Transcription Factor Family AT3G20770 59.7 3.3e-203 704.9
Bpe11g00907 . 57 386 EIL Transcription Factor Family AT3G20770 54.7 1.9e-94 343.6
Bpe11g00907 . 94 325 EIL Transcription Factor Family AT5G65100 56.5 2.0e-71 266.9
Bpe08g01163 . 42 297 EIL Transcription Factor Family AT5G10120 57.9 8.9e-84 307.8
Bpe11g00907 . 57 301 EIL Transcription Factor Family AT5G10120 54.0 3.0e-71 266.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008299 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22070 PF04873 EIN3 1.70E-125 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00907 Bpe_Chr11 FPKM 4.343104 4.722361 10.64633 12.163595 0.422465 0.301471 0.513059 0.520545 0.201587 0.332906