Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00926 ATGGCTGAAACCCTGAGGAGGAGCCTCCGATCACCTAGCAAAAACAATCTCTCGCCGCTTTCTAATCAGAAACTCACTTCTTCTATCGCGACCCCTCAAGCCCTAACTCCTTCAAGGTCGACTCGACGGAATTCAGTTAGACTAGACTCGATTAGGAAGAATTGCGATGAAGAAACTGAGAAGTCCTTTGGAGTTTCTGTCGAAAGACGGAGTGATGCTAAATTTGTGGAGGGATTCGAACCCAAGACGCCTCGTAGATCTATTCGATTCGGTGGAGACATTAGGGAAGATTGTGAAGAAACTTCTGGTAATGGGACAAGTGGTGGAGTTAGAAAACAGCGGGAAACTGAGATAAGTGATGAACGAGCGAAAACCCCAAAATGGGCAAAAGTACGTCAGAAGTTGAAGTATAGAGAGGGGACCAATTCTTTGGAAGATACGTTCTCTCCAGTTTCACCCGAACAAACGGAGACAAAGAAGAGGAGATGCAATGACAGAACAGTGGTTAAAAGAACTTTGGCTTCAAAAAATATAATATCTGACAAAAAGAAAAAGAGTGATTTGGGACCGAAGAGACTCGTGTACTATAAAAAAGTGGTCTACGACGGAGGAGAATTTGAAGTGAAAGACGATGTATATGTGAAGAAGAGAGAGGACGGGAGCTCCGATAATGAAGAACCCCAAATGGAAGAATGTAGAATATGCTTCGCATCCGGAAAGGCTGTAATGATTGAGTGCGATGATTGTTTAGGTGGGTTCCATTTGAAATGCTTGAAGCCACCTTTGAAGGAGATTCCTGAGGGGGATTGGATATGTGAATTTTGTCAGGCTCGCAAAATGGGTAAAAATGTGGTGCTTCCAAAACCTCCCAAGGGAAAAAAACTGTGCAGGACGATGCGAGAGAAGCTTCTATCTGGTGATCTGTGGGCTGCTCGCATTGAAAATTTATGGAAGGAGGTTGATGGTAGCTATTGGTGCCGAATGGAAACCATCATTCGACAGTGTAATGTCATGAGCCCAAAAGAATATGCTGGGGCAAAAAATGAAGGCGATGACGTCTTCTTATGCGAGTACGAGTATGACATTTGTTGGCACAGTTTCAGGCGCATTGCTGACATAGATGACGTTGAAGAGGATGGAGAAGCAACTAACAGTGATGAAGATTGGAATTTTAGCAATGATTCAGACTGTGATAGTGATGAAGAGTTAGAGTATGAAGAAGAGACTGAGAATAAATTACGAGCCAGGTCATCCTTAGCTCAAGATTCAGCTGCAAATTCAAGGAAGGGTAAATACTTTGGACTTCAAAAGATAGGGGTGAAGAAGATCCCAGAGCATGTAAGATGCCACAAGCAAACTGAACTTGAAAAAGCTAAGGCAGCACTTACTTTGGCATCATTACCCAAGTCTCTACCTTGCAGGAATAAAGAAATGGAGGAGATAACTGCATTTATAAAAGGTGCGATTAGTGATGGTAAATGTTTGGGGCGTTGCCTTTATGTTCATGGTGTTCCTGGAACTGGGAAGACGATGACTGTACTTGCGGTATTGAGAAATCTAAAGGGTGAAGTCGATTCTGGAAGTATAAGACCTCACTGTTTTGTGGAGGTTAATGTTCTAAAGCTGGCATCACCAGAAAACATATATAGGGTTATATATGAGGCATTAACTGGGCATAGAGTTAGTTGGAAAAAAGCTCTTCAATTGCTGACTGAACGCTTTTCAGACGGAAATAAAGCTGCCAAAGAGGATGAACGACCTTGTGTTCTGCTCATTGATGAGCTTGATCTTCTCGTGACAAGAAATCAGTCGGTTCTGTACAACATTCTCGATTGGCCAACTAAGCCACATTCCAATTTGGTTGTGATAGGGATAGCAAATACTATGGATCTCCCAGAAAAGTTGCTTCCCCGTATTTCAAGTCGCATGGGCATTGAAAGGCTTTGCTTTGGCCCCTATAATTATCTGCAGCTTCAAGAAATAATCTCAAGTCGCCTCAAAGGAATTAATGCATTTGAAAAACAAGCTATAGAATTTGCATCAAGGAAGGTAGCAGCTATTTCAGGAGATGCACGACGTGCACTTGAGATTTGCAGGCGCGCTGCGGAAATTGCTGATTACCATTTAAAGTTGACCAAAACTTCTAATGCTGTTTCAGAAGGAAAAGAGCTTGTTGGCATGGCCGAGGTAGAAGCAGCCATTCAAGAAATGTTCCAAGCCCCTCATATTCAAGTGATGAAAAACAGTTCCAAAATGAGTAAAATATTTTTGACAGCTATGGTTCATGAACTCTATAAGTCTGGAATGAGCGAAACCACCTTTGAAAAGCTGGCAATGGTTATTTCATGTCTCTGTACGGGCAATGGAGAAACTTTTCCTGGATATGATGCCCTGTTGAAAGTTGGTTGTAAGTTGGGCGAATGCAGAATTATTTTATGTGAAGCAGGAGCTAAGCATATGTTGCAAAAATTACAGTTCAATTTCCCAAGGTTAGTCCTTTTAGCATCATATTACAACCACTAG 2523 42.09 MAETLRRSLRSPSKNNLSPLSNQKLTSSIATPQALTPSRSTRRNSVRLDSIRKNCDEETEKSFGVSVERRSDAKFVEGFEPKTPRRSIRFGGDIREDCEETSGNGTSGGVRKQRETEISDERAKTPKWAKVRQKLKYREGTNSLEDTFSPVSPEQTETKKRRCNDRTVVKRTLASKNIISDKKKKSDLGPKRLVYYKKVVYDGGEFEVKDDVYVKKREDGSSDNEEPQMEECRICFASGKAVMIECDDCLGGFHLKCLKPPLKEIPEGDWICEFCQARKMGKNVVLPKPPKGKKLCRTMREKLLSGDLWAARIENLWKEVDGSYWCRMETIIRQCNVMSPKEYAGAKNEGDDVFLCEYEYDICWHSFRRIADIDDVEEDGEATNSDEDWNFSNDSDCDSDEELEYEEETENKLRARSSLAQDSAANSRKGKYFGLQKIGVKKIPEHVRCHKQTELEKAKAALTLASLPKSLPCRNKEMEEITAFIKGAISDGKCLGRCLYVHGVPGTGKTMTVLAVLRNLKGEVDSGSIRPHCFVEVNVLKLASPENIYRVIYEALTGHRVSWKKALQLLTERFSDGNKAAKEDERPCVLLIDELDLLVTRNQSVLYNILDWPTKPHSNLVVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYLQLQEIISSRLKGINAFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYHLKLTKTSNAVSEGKELVGMAEVEAAIQEMFQAPHIQVMKNSSKMSKIFLTAMVHELYKSGMSETTFEKLAMVISCLCTGNGETFPGYDALLKVGCKLGECRIILCEAGAKHMLQKLQFNFPRLVLLASYYNH 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6841468 6852996 + Bpe004265.1 Bpe11g00926 111071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00926 840 MobiDBLite consensus disorder prediction 95 125 - -
Bpe11g00926 840 MobiDBLite consensus disorder prediction 143 163 - -
Bpe11g00926 840 ProSitePatterns Zinc finger PHD-type signature. 232 275 IPR019786 -
Bpe11g00926 840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 708 IPR027417 -
Bpe11g00926 840 SMART AAA_5 495 649 IPR003593 -
Bpe11g00926 840 Pfam AAA lid domain 672 709 IPR041083 -
Bpe11g00926 840 MobiDBLite consensus disorder prediction 378 407 - -
Bpe11g00926 840 Pfam PHD-finger 232 277 IPR019787 -
Bpe11g00926 840 CDD AAA 476 652 - -
Bpe11g00926 840 ProSiteProfiles Zinc finger PHD-type profile. 229 278 IPR019787 -
Bpe11g00926 840 SUPERFAMILY FYVE/PHD zinc finger 218 282 IPR011011 -
Bpe11g00926 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 285 IPR013083 -
Bpe11g00926 840 MobiDBLite consensus disorder prediction 8 44 - -
Bpe11g00926 840 Gene3D - 652 740 - -
Bpe11g00926 840 Gene3D - 451 651 IPR027417 -
Bpe11g00926 840 MobiDBLite consensus disorder prediction 1 46 - -
Bpe11g00926 840 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 172 830 - -
Bpe11g00926 840 SMART PHD_3 231 276 IPR001965 -
Bpe11g00926 840 MobiDBLite consensus disorder prediction 378 422 - -
Bpe11g00926 840 Gene3D - 320 395 IPR043151 -
Bpe11g00926 840 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 172 830 IPR020793 -
Bpe11g00926 840 Pfam ATPase family associated with various cellular activities (AAA) 499 646 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00926 K02603 ORC1; origin recognition complex subunit 1 - zju:107412606 1075.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00096 Bpe-Chr1:592992 Bpe11g00926 Bpe-Chr11:6841468 9.55E-32 dispersed
Bpe11g00926 Bpe-Chr11:6841468 Bpe01g00458 Bpe-Chr1:2786359 2.41E-07 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00926 . 145 829 Core DNA Replication Machinery Family AT4G14700 62.7 1.0e-249 859.8
Bpe11g00926 . 146 829 Core DNA Replication Machinery Family AT4G12620 63.5 1.5e-256 882.5
Bpe05g00056 . 7 358 Core DNA Replication Machinery Family AT2G37560 66.2 1.0e-137 486.5
Bpe02g02014 . 1 413 Core DNA Replication Machinery Family AT2G01120 61.4 2.5e-138 488.8
Bpe05g00990 . 4 534 Core DNA Replication Machinery Family AT4G29910 56.5 8.8e-171 597.0
Bpe02g02348 . 1 324 Core DNA Replication Machinery Family AT1G26840 59.6 1.3e-93 339.7
Bpe07g00465 . 1 800 Core DNA Replication Machinery Family AT1G79150 54.6 2.3e-228 788.9
Bpe08g01190 . 1 948 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1364.4
Bpe01g00814 . 1 550 Core DNA Replication Machinery Family AT5G46280 81.0 1.8e-256 881.7
Bpe15g00852 CCT,ECH 1 826 Core DNA Replication Machinery Family AT2G16440 70.2 0.0e+00 1116.3
Bpe02g02150 . 936 1646 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1075.8
Bpe08g00796 . 18 846 Core DNA Replication Machinery Family AT5G44635 69.9 0.0e+00 1113.6
Bpe10g00498 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1189.5
Bpe01g00096 . 40 517 Core DNA Replication Machinery Family AT2G29680 56.7 2.5e-148 522.3
Bpe01g00096 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.8 2.6e-136 482.3
Bpe10g00347 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 9.3e-256 879.4
Bpe04g01592 . 28 854 Core DNA Replication Machinery Family AT3G09660 68.0 4.8e-308 1053.5
Bpe15g00015 . 5 626 Core DNA Replication Machinery Family AT2G14050 66.5 4.0e-236 814.3
Bpe05g00287 . 29 421 Core DNA Replication Machinery Family AT2G20980 53.5 1.8e-109 392.9
Bpe09g00382 . 1 142 Core DNA Replication Machinery Family AT1G80190 69.0 6.3e-55 210.7
Bpe05g00429 . 1 143 Core DNA Replication Machinery Family AT3G12530 71.3 7.7e-58 219.9
Bpe08g00963 . 1 145 Core DNA Replication Machinery Family AT3G12530 65.5 6.8e-54 206.8
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT1G19080 65.9 4.6e-68 254.2
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT3G55490 65.9 4.6e-68 254.2
Bpe14g01095 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 1.3e-52 203.0
Bpe15g00335 . 1 1555 Core DNA Replication Machinery Family AT5G67100 57.9 0.0e+00 1691.0
Bpe10g00777 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.9 3.9e-220 761.1
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe05g00690 . 1 457 Core DNA Replication Machinery Family AT5G41880 63.8 4.2e-176 614.4
Bpe06g00299 . 27 1143 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1749.9
Bpe03g01146 . 4 442 Core DNA Replication Machinery Family AT2G42120 77.2 4.7e-204 707.2
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe12g00614 . 6 120 Core DNA Replication Machinery Family AT1G09815 60.2 6.3e-37 150.2
Bpe01g00239 . 4 2121 Core DNA Replication Machinery Family AT1G08260 68.6 0.0e+00 2874.0
Bpe01g00239 . 11 2228 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2848.5
Bpe07g01082 . 7 460 Core DNA Replication Machinery Family AT5G22110 63.7 2.6e-171 598.6
Bpe08g00232 . 7 905 Core DNA Replication Machinery Family AT5G22010 62.6 3.1e-282 968.0
Bpe05g00631 . 4 334 Core DNA Replication Machinery Family AT1G63160 89.4 1.8e-171 598.6
Bpe02g00056 CCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.6e-178 622.1
Bpe04g00011 . 4 337 Core DNA Replication Machinery Family AT1G21690 80.6 1.6e-151 532.3
Bpe14g00388 CCT 1 363 Core DNA Replication Machinery Family AT1G77470 78.2 5.0e-159 557.4
Bpe13g01237 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-249 858.2
Bpe07g00251 . 34 688 Core DNA Replication Machinery Family AT2G06510 53.2 3.6e-202 701.4
Bpe12g00524 CCT 1 626 Core DNA Replication Machinery Family AT5G08020 66.0 2.1e-239 825.1
Bpe07g00755 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 65.7 4.4e-237 817.4
Bpe12g00524 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 65.2 6.6e-236 813.5
Bpe07g00755 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 64.4 8.1e-234 806.6
Bpe07g00251 . 8 809 Core DNA Replication Machinery Family AT4G19130 52.9 1.2e-229 793.1
Bpe02g01809 . 1 396 Core DNA Replication Machinery Family AT5G26680 79.7 5.1e-184 640.6
Bpe04g01926 . 1 299 Core DNA Replication Machinery Family AT2G25100 67.6 9.8e-115 409.8
Bpe08g00178 . 46 802 Core DNA Replication Machinery Family AT1G08130 68.0 1.0e-289 992.6
Bpe08g00178 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.9e-232 800.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002386 0 17 2 1 1 1 1 1 1 2 1 1 1 1 5 1 1 1 1 1 2 1 1 1 2 2 1 1 3 2 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22073 PF00004 AAA 3.00E-20 CL0023 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00926 Bpe_Chr11 FPKM 15.849862 18.470552 50.66383 52.362274 13.610964 13.058014 13.064547 40.703796 37.420826 40.723492