Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00930 ATGTTTCAAGAAGATGGTTCATCTTCCTTAACTTCATCACCCCTTCAATTCTTTTCCATGATGTCTCTTTCACCAACCTTCGGATCACCGTATCCATGGCTCAGAGAGCTCAAATCTGAAGAAAGGGGCTTATATCTGATCCATTTGCTGCTAACTTGTGCAAATCATGTGGCCTCCGGCAGCCTTGAAAATGCAAATATTTCTTTAGATCAAATCTCCCATCTGGCCTCCCCCGTTGGCGATACAATGCAGCGAATTGCTGCTCATTTCACCGAGGCGCTTGGCGATCGAATCCTCAAATCTTTGCCGGGGATCTACAAGGCTCGATATTTGACTCAAACTCCCCTTGTTTCTGAGGAAATTGTTGTTAGAAAACTGTTCTTCGAAATGTTTCCATTCCACAAAGTGACTTTTTTGCTGACAAATCAAGCCATTATGGAAGCCATGGAAGGAGAAAAGATGGTTCATATTATTGATCTCCATGCTGCTGAACCGGCGCAGTGGGTTGTCCTTCTTCAAGCTTTGAGCTCCAGACCAGATGGTCCACCCCATTTGAGACTCACTGGAGTTCATCAACAGAAAGTGATATTGGATCATATGGCTCGAAGACTTACAGAAGAAGCTGAAAAATTGGATATTCCTTTTCAGTTCAATTCGATAGTCTGCAAATTGGAGAATCTAGTCATTGAAAATCTTCGTGTAAAAACCGGGGAGGCTCTTGCGATAAGCTCAGTTCTTCAATTGCACACCCTTTTGGCCTCAGACGATGAACCTCAAAGAAGAAGTTTAAACGGAGCTCAATTTTATCGAAATATGCAAGCGAACAACGGACTGGCAGGAGAGTTAATCGATAAAGAGATGGCAAATGGGTGTAGTCCGAGCTCCGATTCGGCCTCCTCTTCGCCATTATCGCAGTCTAGTTCGACGAAGATAGATAGTTTTCTCAACGCCTTGTCGGCTTTGACCCCAAAAGTGATGGTAGTTACAGAGCAAGACTGTAATCACAATGGATCCACTCTCATGGAGCGGCTATTGGAAGCTCTCCATTCATATGCAGCCATTTTCGATTGCTTGGAGTTCACCATGGGAAGAGCACCGTACGAGAGACTGAAGGTGGAGAAGATGATATTTGGAGAGGAAATCAAGAACATCATCGCTTGCGAGGGAATCGAACGGAGGGAAAGGCACGAAAAGCTCGAGAAATGGATTCACCGGCTTGAATCGATCGGGTTTGGAAATGTAAACTTGAGCAACTACAGCATTTTACAAGCGAAAAGGTTGTTGTTAGGATATGGCTGCGACGGGTACAAGATCAGGGAAGAGAGTGGCTGTGTGGTCATCTGTTGGCACGACCAGCCGTTGTTTTCGGTCTCGGCTTGGAGGGATAGGAGGTAG 1395 45.23 MFQEDGSSSLTSSPLQFFSMMSLSPTFGSPYPWLRELKSEERGLYLIHLLLTCANHVASGSLENANISLDQISHLASPVGDTMQRIAAHFTEALGDRILKSLPGIYKARYLTQTPLVSEEIVVRKLFFEMFPFHKVTFLLTNQAIMEAMEGEKMVHIIDLHAAEPAQWVVLLQALSSRPDGPPHLRLTGVHQQKVILDHMARRLTEEAEKLDIPFQFNSIVCKLENLVIENLRVKTGEALAISSVLQLHTLLASDDEPQRRSLNGAQFYRNMQANNGLAGELIDKEMANGCSPSSDSASSSPLSQSSSTKIDSFLNALSALTPKVMVVTEQDCNHNGSTLMERLLEALHSYAAIFDCLEFTMGRAPYERLKVEKMIFGEEIKNIIACEGIERRERHEKLEKWIHRLESIGFGNVNLSNYSILQAKRLLLGYGCDGYKIREESGCVVICWHDQPLFSVSAWRDRR 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6880929 6882323 + Bpe004269.1 Bpe11g00930 111075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00930 464 PANTHER SCARECROW-LIKE PROTEIN 3 2 462 IPR030008 GO:0003700|GO:0005634|GO:0009739
Bpe11g00930 464 Pfam GRAS domain family 46 461 IPR005202 -
Bpe11g00930 464 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 462 IPR005202 -
Bpe11g00930 464 ProSiteProfiles GRAS family profile. 37 461 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00930 Bpe-Chr11:6880929 Bpe15g00970 Bpe-Chr15:19311839 0 dispersed
Bpe11g00930 Bpe-Chr11:6880929 Bpe14g00078 Bpe-Chr14:1265882 7.16E-66 transposed
Bpe11g00930 Bpe-Chr11:6880929 Bpe02g01376 Bpe-Chr2:17352167 4.57E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22074 PF03514 GRAS 1.40E-134 CL0063 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00930 - - tcc:18589932 682.174