Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00939 ATGCTTGGTCTCCGAGACCTCTTCGTCGTCGCTCCGGCTTCGTCTTTTCACTCGCACGAACCCATAATCTCAGATCCACATTCAATCGTCGGTTCAAACCCCGGAACCGCTCTTGGCGTCGGAGTCGGTGTCGGGCTTTTTCCTCTCCTAGCAACTGCTCCTTGCCTAGCTACGTCCAACGTCGGTGGAGCTGAAGATCAAAATATCGGTCATCGAATTAGAGGCGGAGGAATCCAACTATGGCACAATCAACAGCCGAACCACGATAATTACTTAAGGAAACCAACAATTGATAACCATAGCTCTGGAAATTCTGAAAATGGCGGAGCTATCGGGTCTGCGGCCACCTGCCAAGACTGTGGAAACCAAGCGAAAAAAGATTGCAGCCATAGACGGTGTAGAACCTGCTGTAAAAGCCGCGGTTTTGACTGTTCAACTCACGTTAAGAGCACATGGGTTCCGGCGGCTCGGCGGAGGGAGCGGCAGATGATAACAGCCGGTTCATCTGGGTCAACTTCGGGTGCAAAAAAACCAAGACTCGTTACTTCACAGACCACGACCAACTCCCACACTTCCGCCTCCACCACTCCTCCGAGAAGCTATGAAACCACCTCTAGCCACCCTGCCGATGGAACGAAGGAGACGCTACCGGGGCAAGTACGTGCGCCGGCGGTGTTCAAGTGCGTGAGAGTGACCGCCGTGGACGACGAAGAAGACGAATACGCTTACCAAGCCGTCGTAAGAATCGGAGGACACGTTTTCAAAGGGTTTCTGTACGATCAAGGAGCTGAATCGAGAGAAGTTTTTCCAAATATTTCAGACCTCCATTTAAATGGAGCTGTAGGCAATGGCAAAAATGGAGCTTCTTCTACTTCTCCTCTCCTCCATCCTACCGATATCTTTGGAACCTCTAGTTCAGCCGCCGCTGCTACTGCATTTCTTGGTGGTTCAAGCTATGGTAATGGCGTTTAA 972 51.23 MLGLRDLFVVAPASSFHSHEPIISDPHSIVGSNPGTALGVGVGVGLFPLLATAPCLATSNVGGAEDQNIGHRIRGGGIQLWHNQQPNHDNYLRKPTIDNHSSGNSENGGAIGSAATCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQMITAGSSGSTSGAKKPRLVTSQTTTNSHTSASTTPPRSYETTSSHPADGTKETLPGQVRAPAVFKCVRVTAVDDEEDEYAYQAVVRIGGHVFKGFLYDQGAESREVFPNISDLHLNGAVGNGKNGASSTSPLLHPTDIFGTSSSAAAATAFLGGSSYGNGV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6952178 6953232 + Bpe004276.1 Bpe11g00939 111084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00939 323 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 216 262 IPR006511 -
Bpe11g00939 323 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 321 - -
Bpe11g00939 323 MobiDBLite consensus disorder prediction 164 212 - -
Bpe11g00939 323 MobiDBLite consensus disorder prediction 164 216 - -
Bpe11g00939 323 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 321 IPR007818 GO:0003700|GO:0006355
Bpe11g00939 323 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Bpe11g00939 323 Pfam Domain of unknown function (DUF702) 115 264 - -
Bpe11g00939 323 MobiDBLite consensus disorder prediction 85 107 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe08g01311 Bpe11g00939 CCT
Bpe08g00289 Bpe11g00939 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00368 Bpe-Chr2:2420906 Bpe11g00939 Bpe-Chr11:6952178 4.26E-46 dispersed
Bpe02g01715 Bpe-Chr2:19629997 Bpe11g00939 Bpe-Chr11:6952178 1.47E-50 dispersed
Bpe06g00032 Bpe-Chr6:385485 Bpe11g00939 Bpe-Chr11:6952178 2.11E-45 dispersed
Bpe10g00138 Bpe-Chr10:2605842 Bpe11g00939 Bpe-Chr11:6952178 4.24E-48 dispersed
Bpe11g00939 Bpe-Chr11:6952178 Bpe08g00289 Bpe-Chr8:1754450 1.22E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22075 PF05142 DUF702 2.00E-60 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00939 - - vri:117916582 425.246