Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00949 ATGGAGGGAGTCGTTACGGAAACGAAGCCAAAGACGAAGATCGTTTGCACTTTGGGACCGGCGTCCAGGTCTGTCCCCATGGTCGAGAAGCTTCTGAGGGCCGGGATGAACGTCGCGCGTTTCAACTTTTCTCACGGATCGCATGCCTACCATCAGGAGACGCTTGACAATCTAAGGGCTGCAATGGAGAATACTGGCATTCTATGCGCCGTAATGCTTGATACCAAGTATTGGATCTTAATAACATTCTGCTTGATTCATTCTTGTGGCATGACACAGGGGCCGGAGATTCGAACAGGATTTTTGAAAGACAACCAACCGATCCAACTGAATCAAGGCCAGGAGATAACCATATCTACTGATTACAGCCTAGAAGGTGATGAGAATATGATTTGCATGAGCTACAACAAATTGGCTGAGGATGTCAAGCCGGGCGGTGTCATACTTTGTGCAGATGGCACAATTTCTTTTACGGTTTTATCATGTGACACGGAATTGGGTTTGGTTCGGTGTCGCTGTGAGAACTCTGCAGTTCTCGGTGAGAGAAAGAATGTTAATCTCCCAGGGGTTATAGTTGATCTCCCAACTTTAACAGAAAAGGACAAGGAAGATATTATGGAGTGGGGTGTTCCTAATCATATTGACATGATTGCTCTTTCTTTTGTGCGGAAGGGTTCGGATCTCGTAGAGATTCGGAAGCTGCTGGGAGATCATTCTAAGACAATTCTTCTGATGTCCAAGGTTGAAAATCAAGAAGGTGTTGCTAATTTCGATGACATTCTTGCAAATTCGGATGCGTTCATGGTAGCACGGGGCGACCTTGGAATGGAAATTCCGATCGAGAAGATATTTCTGGCGCAGAAAGTGATGATATACAAGTGTAACATCCAGGGAAAACCTGTTGTGACAGCTACACAGATGTTGGAATCCATGATCAAATCTCCCCGGCCAACCAGAGCCGAAGCCACTGACGTTGCAAATGCAGTTCTTGACGGGACAGATTGTGTGATGCTCAGTGGAGAGACAGCTGCCGGGGCTTATCCAGAACTTGCAGTGCAGACCATGGCGAAAATATGTGTTGAAGCTGAAAGCACCCTCAACTATGGAGATCTCTTCAAAACGATTATGGAACATTCACCAGTGCCTATGAGCCCATTGGAGAGCTTGGCATCTTCCGCTGTTAGAACGGCGAACTCTGCAAAAGCCGCCCTTATTCTGGTCCTAACCCGAGGTGGAAGCACGGCAAAACTGGTGGCAAAATATCGTCCCGGAACGCCTATTTTGTCCGTTGTTGTTCCAGAGATCAAGACAGATTCCTTTGAATGGTCGTGCAGCGACGAAGCTCCGGCGAGGCACAGCTTAATTTTCAGGGGTTTGGTGCCGGTTCTCTGCACGGCATCGGCCAAGGCTTCTCATGCGGAAACTACGGAAAAAGCAATAGAATTCGCCATTCAACACGCCAAGACGAAGGGGCTCTGCAAGAAGGGCGATTCCGTGGTGGCTCTACACCGAGTGGGAACCGCCTCGGTGATCAAGATCTTGACTGCCAAGTGA 1554 48.2 MEGVVTETKPKTKIVCTLGPASRSVPMVEKLLRAGMNVARFNFSHGSHAYHQETLDNLRAAMENTGILCAVMLDTKYWILITFCLIHSCGMTQGPEIRTGFLKDNQPIQLNQGQEITISTDYSLEGDENMICMSYNKLAEDVKPGGVILCADGTISFTVLSCDTELGLVRCRCENSAVLGERKNVNLPGVIVDLPTLTEKDKEDIMEWGVPNHIDMIALSFVRKGSDLVEIRKLLGDHSKTILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVQTMAKICVEAESTLNYGDLFKTIMEHSPVPMSPLESLASSAVRTANSAKAALILVLTRGGSTAKLVAKYRPGTPILSVVVPEIKTDSFEWSCSDEAPARHSLIFRGLVPVLCTASAKASHAETTEKAIEFAIQHAKTKGLCKKGDSVVALHRVGTASVIKILTAK 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7065574 7067579 - Bpe004287.1 Bpe11g00949 111094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00949 517 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 10 369 IPR015813 GO:0003824
Bpe11g00949 517 PRINTS Pyruvate kinase family signature 214 228 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe11g00949 517 PRINTS Pyruvate kinase family signature 244 270 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe11g00949 517 PRINTS Pyruvate kinase family signature 84 100 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe11g00949 517 PRINTS Pyruvate kinase family signature 340 356 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe11g00949 517 PRINTS Pyruvate kinase family signature 296 320 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe11g00949 517 PRINTS Pyruvate kinase family signature 271 295 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe11g00949 517 PRINTS Pyruvate kinase family signature 321 339 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe11g00949 517 ProSitePatterns Pyruvate kinase active site signature. 242 254 IPR018209 GO:0004743|GO:0006096
Bpe11g00949 517 PANTHER PYRUVATE KINASE 4 517 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe11g00949 517 CDD Pyruvate_Kinase 10 516 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe11g00949 517 Gene3D - 363 504 IPR036918 -
Bpe11g00949 517 PANTHER PYRUVATE KINASE 4 517 - -
Bpe11g00949 517 SUPERFAMILY PK beta-barrel domain-like 95 194 IPR011037 -
Bpe11g00949 517 SUPERFAMILY PK C-terminal domain-like 351 515 IPR036918 -
Bpe11g00949 517 Gene3D - 95 195 IPR015806 GO:0004743|GO:0006096
Bpe11g00949 517 Gene3D - 11 362 IPR040442 -
Bpe11g00949 517 TIGRFAM pyruv_kin: pyruvate kinase 11 506 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bpe11g00949 517 Pfam Pyruvate kinase, alpha/beta domain 387 513 IPR015795 -
Bpe11g00949 517 Pfam Pyruvate kinase, barrel domain 11 370 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00949 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101216029 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00949 Bpe-Chr11:7065574 Bpe12g00017 Bpe-Chr12:182390 0 dispersed
Bpe11g00949 Bpe-Chr11:7065574 Bpe08g01185 Bpe-Chr8:13576322 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g13 . . . . . . Bma14g00739 Bma07g01367 . . . . . . . Cpe05g00567 . . . . . . . . Cla02g02367 Cam02g2518 Cec02g2565 Cco02g2594 Clacu02g2492 Cmu02g2423 Cre02g2741 . Cone5ag1304 Cone18ag0007 Cone11ag1586 . . Chy05g00007 Cme05g00009 . . Bda07g00775 Bda09g00342 . Bpe11g00949 . . Sed01g3428 Cmo02g01195 Cmo20g00006 Cma02g01161 Cma20g00006 Car02g00961 Car20g00004 Cpe16g00942 . Bhi10g00488 Tan07g0564 Cmetu05g1641 . Hepe08g0007 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001167 5 3 3 5 4 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 1 2 2 2 3 2 4 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00949 Bpe_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0