Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00969 ATGATGATGATGTTTGAGGAGATGGGATTTTGTGGCGACTTGGATTTTCTGTCAGCACCTCCTGGAGAAGGAGATATGGCTGCTCCACAGACTGAACCTGAAGCTACTGTGGACGATGATTATTCAGATGAAGAGATCGATGTTGATGAGCTTGAGAGGAGGATGTGGAGGGACAAAATGCGTCTGAAACGGCTGAAAGAGCAGACCAAAGGGAAGGAAGGAATTGATATGGCAAAACAGCGCCAATCTCAAGAACAAGCGAGGAGGAAGAAGATGTCTAGGGCCCAAGATGGGATCTTGAAGTACATGTTGAAGATGATGGAAGTTTGCAAAGCTCAAGGGTTTGTTTATGGGATTATTCCAGAGAAGGGGAAACCCGTTACTGGAGCATCGGATAATCTCCGAGAATGGTGGAAAGATAAAGTGAGATTTGATCGAAACGGACCAGCTGCCATAGCCAAGTACCAAGCCGATAATGCAATTCCAGGCAAAAACGAAGGCTGCAATTCGATTGGAACAGAAAATGAGCCGAACTTCGACGTGCAGGATTCCAAACCAGAAAATCTCAGTTCGATCAGTTTAGGACTGGAGAGAACTCAAGATAGGCTTCCCATCCGACATTCAACTTATCCGATCAAAGGAGAAGTCGTTACAAACTTAGATTTTGTGAGGAAAAGAAAGCCGACCAGTGATTTAAACACGACTGATCAAAAAATCTATACTTGCGAGTTTCTTCAATGTCCTTACAGTGAGTCTCGACTCCGCTTTCATGACAGGACTTCTATGGACAATCATCAAATGTCTTGCCCATATCGGACTTCTTCGGACTTTGGGAGTTCAAATTTCCAATTCAACGAAGTTAAGCCAGTCATCTTCCAGTCATCTTTCGTCCAGTCCAAGCCTCCTCCGACTTTCGACTTATCCGGGCTTGGAGTTCCAGAAGAGGGGCAGAAACTGATAAGTGAGCTCATGTCAGTCTACGATACTAATATTCAAGGCGGCAAGAACTCAAATTCAGGTCCAAATGCAATGACCGATAATCAAGCTGTTTCTCTGCCGAAGATTCATCATCAGCCAAACGAATTCTTCGGAAATCAAGGTGGTGTTATTATGGAAGGCAACTTCTACCCAGATGCCAATATTTCAGTTAATCATCAGATGGTATGTCGGGAGGGAGGAGGTCAATTCGATCGATTCAAGCCCTTTGAGACCAACAATGGCAGCAATAACTTCCCGTTGATGTTTGGATCGCCATTCGAAATATCATCGTTCAACTACAAAGAAGATGTAGGGGGAGTGGCGATCAATCCGGCCTCGAAGCACCAAGATATTCCAATCTGGTACCAG 1347 44.69 MMMMFEEMGFCGDLDFLSAPPGEGDMAAPQTEPEATVDDDYSDEEIDVDELERRMWRDKMRLKRLKEQTKGKEGIDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGKNEGCNSIGTENEPNFDVQDSKPENLSSISLGLERTQDRLPIRHSTYPIKGEVVTNLDFVRKRKPTSDLNTTDQKIYTCEFLQCPYSESRLRFHDRTSMDNHQMSCPYRTSSDFGSSNFQFNEVKPVIFQSSFVQSKPPPTFDLSGLGVPEEGQKLISELMSVYDTNIQGGKNSNSGPNAMTDNQAVSLPKIHHQPNEFFGNQGGVIMEGNFYPDANISVNHQMVCREGGGQFDRFKPFETNNGSNNFPLMFGSPFEISSFNYKEDVGGVAINPASKHQDIPIWYQ 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7213564 7215387 - Bpe024810 Bpe11g00969 111114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00969 449 MobiDBLite consensus disorder prediction 20 42 - -
Bpe11g00969 449 Gene3D - 81 160 IPR023278 GO:0003700|GO:0005634
Bpe11g00969 449 MobiDBLite consensus disorder prediction 67 92 - -
Bpe11g00969 449 Coils Coil 48 68 - -
Bpe11g00969 449 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 173 IPR006957 GO:0005634
Bpe11g00969 449 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 172 448 IPR006957 GO:0005634
Bpe11g00969 449 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 2 173 - -
Bpe11g00969 449 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 172 448 - -
Bpe11g00969 449 Pfam Ethylene insensitive 3 49 185 IPR006957 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00969 K14514 EIN3; ethylene-insensitive protein 3 - qsu:111991923 342.428
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00907 Bpe-Chr11:6724451 Bpe11g00969 Bpe-Chr11:7213564 5.04E-54 dispersed
Bpe04g01634 Bpe-Chr4:22552675 Bpe11g00969 Bpe-Chr11:7213564 3.76E-112 transposed
Bpe11g00969 Bpe-Chr11:7213564 Bpe08g01163 Bpe-Chr8:13394047 3.30E-104 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g01163 . 2 607 EIL Transcription Factor Family AT2G27050 59.5 1.5e-189 659.4
Bpe11g00907 . 57 340 EIL Transcription Factor Family AT2G27050 59.9 2.6e-93 339.7
Bpe04g01634 . 8 172 EIL Transcription Factor Family AT5G21120 51.7 8.9e-37 151.8
Bpe11g00907 . 57 582 EIL Transcription Factor Family AT1G73730 53.4 2.8e-137 485.7
Bpe08g01163 . 41 300 EIL Transcription Factor Family AT1G73730 67.9 4.7e-100 362.1
Bpe11g00969 . 40 192 EIL Transcription Factor Family AT1G73730 58.7 3.1e-43 173.3
Bpe04g01634 . 29 150 EIL Transcription Factor Family AT1G73730 64.3 3.2e-40 163.3
Bpe08g01163 . 3 607 EIL Transcription Factor Family AT3G20770 59.7 3.3e-203 704.9
Bpe11g00907 . 57 386 EIL Transcription Factor Family AT3G20770 54.7 1.9e-94 343.6
Bpe11g00907 . 94 325 EIL Transcription Factor Family AT5G65100 56.5 2.0e-71 266.9
Bpe08g01163 . 42 297 EIL Transcription Factor Family AT5G10120 57.9 8.9e-84 307.8
Bpe11g00907 . 57 301 EIL Transcription Factor Family AT5G10120 54.0 3.0e-71 266.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22078 PF04873 EIN3 2.70E-58 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00969 Bpe_Chr11 FPKM 6.83258 7.599651 8.374259 8.354787 6.114225 6.1323 6.731462 9.360799 8.121853 9.3524