Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00978 ATGACGAGGGTAAGTCGTGATTTTGCTGACACAATGAGAAAAGAGGCTGTTCCGGCTGTGTCAGCTGACGTGTTGTTCGCATCTAGCCGGTTTCCAAATTACAAAATTGGAGCTAACAATCAGATGGTTGAGTCCAAAGATGATCCCAAAATACGATCAATGAAAGAGGCTGTCGCACGTGAGACTGCTCAACTGTTGGAACAACAGAAGCGCCTCTCAGTTCGCGATTTGGCTAGCAAGTTTGAGAAGGGTTTGGCAGCAGCTGCTAAGTTATCTGAAGAGGCAAGACTGAGAGAGGCTGCATCATTGGAAAAGCATGTTCTATTGAAGAAGCTCAGAGATGCATTGGAATCCTTAAAAGGGCGTGTCGTAGGAAGGAACAAAGATGATGTGGATGAAGCCATTGCAATGGTGGAAGCTTTAGCAGTTCAACTGACTCAAAGAGAAGGCGAGCTGATACAAGAGAAGGCGGAAGTGAAGAAACTGGCAAATTTTCTTAAGCTGGCTTCAGAAGATGCCAAGAGACTTGTTGATGAAGAAAGAGCATTTGCTCGAGCAGAAATTGAAAGTGCCCGTGCTGCAGTTCAGAGAGTTGAAAAGGCCCTTCAGGAACAAGAAAACATGTCTCGAGCCTGTGGGAAACAGGATCTGGAAGAATTGATGAAGGAGGTTCAAGAGGCTAGACGGATAAAAATGCTCCACCAACCTAGTAAGGTAATGGACATGGAGCATGAGCTTCGAGCACTGAGGATGCAGTTTGCTGAGAAATCCAAGCTTTCTATTCAGCTTCAGAAGGCGCTTACAATAAGCAAGAGTGGTGTGGCAAGTGGTTTACATTTGTATGAATTAGATGGCGCTGAAGCATTAGGTTCATGTTTGCGCATCCAACCCTGCTCAGATATTGCTCCAGAACTTTCTATGTGTTTTATTCAGTGGTATCGTGTAGTTTCAGAAAGTGGCAAAAGGGATCCAATTTCAGGAGCAACTAAATCAGTTTATGCTCCAGAGCCATTTGATGTGGGCAGAATCTTACAAGTCGAAATTATTTCAGAAGACCAGAAAATCACATTGGCAACCACGGGTCCCATTGATCCAGCTGCTGGTTTGGGGAACTATGTGGAGGCACTTGTCCGACAACATGATGTTGAATTCCATGTGGTTATTACGCAGATGAATGGCGAAAATCATTCATCTGAATCGGTTCATGTTTTTCATGTGGGAAAGATGAGAATAAAGATTCAGAAAGGAAAGACAACAATAGCTAAAGAATATTATTCCACTTCAATGCAGGATGTTCCTGTTGAAGAAGATGATGACGACCTTGATCTCTTTGGTGATGAAACGGAAGAGGAGAAGAAAGTAGCAGAAGAGAGGGAGGCAGCCAAAAAATCATCTGGCAAGAAGAAAGAGAGTGGAAAATCTTCTGTTCTTTTGGATGTAAAACCATGGGACGACGAAACAGACATGAAGAAACTAGAAGAGGCAGTTCGCAGTATTGAGATGCCTGGTCTCTTGTGGGGTGCATCCAAACTTGTGCCAGTTGGATATGGAATAAAGAAGCTGCAAATTATGCTCACCATTGTTGATGATCTTGTTTCGGTCGATTCCCTTATAGAGGAACAGCTTACTGTCGAACCGTGCAACGAGTACATCCAAAGCTGTGACATTGTTGCCTTCAACAAAATCTAA 1689 43.58 MTRVSRDFADTMRKEAVPAVSADVLFASSRFPNYKIGANNQMVESKDDPKIRSMKEAVARETAQLLEQQKRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLKGRVVGRNKDDVDEAIAMVEALAVQLTQREGELIQEKAEVKKLANFLKLASEDAKRLVDEERAFARAEIESARAAVQRVEKALQEQENMSRACGKQDLEELMKEVQEARRIKMLHQPSKVMDMEHELRALRMQFAEKSKLSIQLQKALTISKSGVASGLHLYELDGAEALGSCLRIQPCSDIAPELSMCFIQWYRVVSESGKRDPISGATKSVYAPEPFDVGRILQVEIISEDQKITLATTGPIDPAAGLGNYVEALVRQHDVEFHVVITQMNGENHSSESVHVFHVGKMRIKIQKGKTTIAKEYYSTSMQDVPVEEDDDDLDLFGDETEEEKKVAEEREAAKKSSGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEQLTVEPCNEYIQSCDIVAFNKI 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7277078 7292286 - Bpe004310.2 Bpe11g00978 111123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00978 562 Coils Coil 181 208 - -
Bpe11g00978 562 Coils Coil 210 230 - -
Bpe11g00978 562 CDD EF1B 476 562 IPR014038 GO:0003746|GO:0006414
Bpe11g00978 562 PANTHER STOMATAL CLOSURE-RELATED ACTIN-BINDING PROTEIN 1 1 434 IPR039640 GO:0003779|GO:0007015|GO:0010119
Bpe11g00978 562 MobiDBLite consensus disorder prediction 449 469 - -
Bpe11g00978 562 Pfam PH domain of plant-specific actin-binding protein 381 432 IPR041144 -
Bpe11g00978 562 Pfam Actin-binding domain of plant-specific actin-binding protein 54 96 IPR032012 GO:0003779
Bpe11g00978 562 Gene3D - 270 365 - -
Bpe11g00978 562 Gene3D - 100 151 - -
Bpe11g00978 562 Pfam EF-1 guanine nucleotide exchange domain 475 562 IPR014038 GO:0003746|GO:0006414
Bpe11g00978 562 SMART EF1_GNE_2 473 562 IPR014038 GO:0003746|GO:0006414
Bpe11g00978 562 Coils Coil 51 71 - -
Bpe11g00978 562 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 437 445 IPR001326 GO:0003746|GO:0005853|GO:0006414
Bpe11g00978 562 Gene3D - 366 439 - -
Bpe11g00978 562 SUPERFAMILY eEF-1beta-like 470 562 IPR036219 -
Bpe11g00978 562 Pfam Ig domain of plant-specific actin-binding protein 281 378 - -
Bpe11g00978 562 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 551 562 IPR001326 GO:0003746|GO:0005853|GO:0006414
Bpe11g00978 562 Gene3D - 466 562 IPR014717 -
Bpe11g00978 562 Pfam Coiled-coil regions of plant-specific actin-binding protein 100 267 IPR032009 -
Bpe11g00978 562 PANTHER CYCLIN 4 1 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01078 Bpe-Chr3:29985846 Bpe11g00978 Bpe-Chr11:7277078 1.99E-171 dispersed
Bpe11g00978 Bpe-Chr11:7277078 Bpe15g00214 Bpe-Chr15:13276035 4.83E-57 dispersed
Bpe11g00978 Bpe-Chr11:7277078 Bpe04g01372 Bpe-Chr4:20338198 9.46E-179 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00978 - - pper:18779648 679.093