Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01034 ATGATTTTCATGTTTCAGATCTTAGGTAGATGGGATCCTGATGAAGCATGCAGGCCTATCATTGGGGAAGCACCTGTGTTTTATCCCACGACTGAGGGTGGCGCTACTATAAAGTCATTATTTTTATTTTTGTCTTATTTTCTTGTGTACTATGGAGCTGACTTGGAAACAGGAACATTTGGAAGTGGGTTCCCTAAAGCATCACATTCGCCAACTCAAAGCAATCCTGACAAGTATATGATTTCTGGGTGGAATCTTAACAACTTTCCGCGGTTGCCAGGTTCTGTGTTGAGTTTTGAAGAAAGCAATATTTCAGGAGTTCTAGTGCCGTGGCTTTATGTTGGGATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGATCATCATCTTTACTCGTTAAACTATTTACACTTGGGTGATCCAAAAGTTTGGTACGGAGTTCCTGGAAGCCATGCTTCTACTTTGGAAGCTGCAATGAAAAAGCATTTGCCAGATTTGTTCGAAGAACAGCCAGATTTACTACATGAATTGGTTACTCAGTTATCACCTTCGGTTCTCAAATCAGAAGGAATACCAGTATGCCGTGCTGTTCAAAATGCAAGGGAGTTTGTTCTGACATTTCCAAGGGCATACCATGCTGGATTTAATTGTGGTTTCAATTGCGCCGAGGCAGTGAATGTGGCACCTGTTGATTGGTTGGCTCATGGGCAAAATGCTGTGGAGCTCTATAGTGAGCAGTCTCACAAGACGTCAGTGTCTCATGATAAATTATTATTTGGTTCAGCTGAGGCAGCTGCTCAAGCTCTTTCAGAGGTTTATGCTCTTGGGAAGGAAACTCCATGGAAATATGTGTGTGGTATAGATGGGGCCCTTACAAAGGCAGTTAAGGAAAGGGTCGAGATGGAGAAGGAGAGGTTAGTTTTTCTTTCAGCTCATTTGAAGGTGAAAAAGATGAAAAGAGAAGTCGATTGTGAGGACAGGGAATGCTTTTCTTGCTTTTACGACTTACACTTGTCTGCAACTGGCTGCAAGTGCTCCCCCAATCGTTTTTCATGCCTTAAACACACGGATAACTTTTGTTCGTGTGAAATAGATCAAAGATTTGTCCTCGTTCGCTATACCATAGATGAACTCGACTCTCTTGTTGGAGCCTTGGAAGGAGGATTAAGGGCCGCAGAGAACTCTCAAAAAAATTCTTATTCTGATGATTGCGATTCAAATATGGAATCGGGGAGTAAATTATCCAATTCTAAGTCGGAAAATTCAGTCGAAAGATTTGGCATTTACGAAGAAACTGCAAAGAGGATGAGAATAGATCTTAATTACAGTTCATTTGGTCATAAAAACGTGGCGAGGAAATTGGATCTTAACTGTATATACTCCAGTCATCCATCGTCAGAAGTACAGTCAGATTCTTGGAACGGAAGCTCATCTCACTATCCAAGTGGTACTAGTAAAGACGTCCTCGAAGGTGGAACCGCGGACCCAACACGAGAAAAAGATATAGTTGTAGGCACGAATCGAAGAGGACTCTTAATCGATTTGAATCTTGATATTACGTGGGAGGGAGAGGAAAATGGGTATCTTGGTTCATCTGATCATAAACTAATCAAAGATGAAGTCGAGAATTTGCATAGATGGGACAGAGATTCATCTGCTTTTTCAGGCACCAATCGTTCTTCAGGTTTTGGAGATGGTGGGAGTAGAGATTTGCCGTTTGATTTTGATTTTGCATTTCATCCACTTTCACATACTACTTCAATGCCGAGTCGCTCCTTGAAAATGGAAGCTCTAGATCCCTCTGAGCCCGCGCTAATAGACATCGGAACTCTGGTGTTTGGAAACTGTTGGTGCAGTAAGCAGGCTATATTTCCGAAAGGTAAAAATATATGTCCAAAATTTGAATTTTCAAATTGTTTTATTTTGAATTTTCTTCTTCAATCTTTGTCTATATTTTCAGGATATAGAAGCCGTGTTAAATTCAACAGTCTGATTGATCCAACGGTTAGCTGTAGCTATGTATCGGAAGTTCTCGATGGAAGGTCTCTTCGGCCTCTATTCAAGGTCACGTCTGACGAATTTCCGTGGGAGTCTTTTGAAAACTCCTCCCCCGACGGATGCTGGGAAATGGTAATGCAGAGCATAAACCGAGAAATTAATAGAAGGAAACGGCCCCGTGGTTTGCAGCCATTGCAGAAAGTGAATGGTCTTCAAATGTTTGGTTTGCTCTCCCCACATATTAGACAGAGAATCGAGGCGCTGGATCCACATCATAGATTCTTGCTGTATTGGATTAATCGGCACAGCAATGGCAGTACAAAAATCGATTATCCGTCGAGTCGCACACCAGAAGCATCCAGAACAAGGACGTTGGATATCGGTGTTCGTCGAGGGGACGAAGAAAAAGTGCTGGGGGGGCTCCTGAACAAGGCAAGTAAAAGAGAGCTGAGCTTAATGCACAAAATCTTCTGCAATGAACATATAAATGATGAATTGAGATTGGGTCTGGCATCAACTATTGAGGAGAAGCTACGTTTTTTTGAATAA 2547 41.85 MIFMFQILGRWDPDEACRPIIGEAPVFYPTTEGGATIKSLFLFLSYFLVYYGADLETGTFGSGFPKASHSPTQSNPDKYMISGWNLNNFPRLPGSVLSFEESNISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHLGDPKVWYGVPGSHASTLEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGIPVCRAVQNAREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLAHGQNAVELYSEQSHKTSVSHDKLLFGSAEAAAQALSEVYALGKETPWKYVCGIDGALTKAVKERVEMEKERLVFLSAHLKVKKMKREVDCEDRECFSCFYDLHLSATGCKCSPNRFSCLKHTDNFCSCEIDQRFVLVRYTIDELDSLVGALEGGLRAAENSQKNSYSDDCDSNMESGSKLSNSKSENSVERFGIYEETAKRMRIDLNYSSFGHKNVARKLDLNCIYSSHPSSEVQSDSWNGSSSHYPSGTSKDVLEGGTADPTREKDIVVGTNRRGLLIDLNLDITWEGEENGYLGSSDHKLIKDEVENLHRWDRDSSAFSGTNRSSGFGDGGSRDLPFDFDFAFHPLSHTTSMPSRSLKMEALDPSEPALIDIGTLVFGNCWCSKQAIFPKGKNICPKFEFSNCFILNFLLQSLSIFSGYRSRVKFNSLIDPTVSCSYVSEVLDGRSLRPLFKVTSDEFPWESFENSSPDGCWEMVMQSINREINRRKRPRGLQPLQKVNGLQMFGLLSPHIRQRIEALDPHHRFLLYWINRHSNGSTKIDYPSSRTPEASRTRTLDIGVRRGDEEKVLGGLLNKASKRELSLMHKIFCNEHINDELRLGLASTIEEKLRFFE 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7672353 7676798 - Bpe004360.1 Bpe11g01034 111179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01034 848 SUPERFAMILY Clavaminate synthase-like 84 264 - -
Bpe11g01034 848 Pfam F/Y rich C-terminus 684 763 IPR003889 GO:0005634
Bpe11g01034 848 MobiDBLite consensus disorder prediction 396 418 - -
Bpe11g01034 848 Pfam JmjC domain, hydroxylase 111 227 IPR003347 -
Bpe11g01034 848 MobiDBLite consensus disorder prediction 464 501 - -
Bpe11g01034 848 MobiDBLite consensus disorder prediction 464 484 - -
Bpe11g01034 848 SMART cupin_9 78 244 IPR003347 -
Bpe11g01034 848 ProSiteProfiles JmjC domain profile. 78 244 IPR003347 -
Bpe11g01034 848 PANTHER LYSINE-SPECIFIC DEMETHYLASE 49 841 - -
Bpe11g01034 848 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 49 841 - -
Bpe11g01034 848 Gene3D Cupin 38 275 - -
Bpe11g01034 848 Gene3D - 602 759 - -
Bpe11g01034 848 SMART fyrc_3 686 774 IPR003889 GO:0005634
Bpe11g01034 848 ProSiteProfiles FYR domain FYRC motif profile. 682 768 IPR003889 GO:0005634
Bpe11g01034 848 SMART fyrn_3 609 680 IPR003888 GO:0005634
Bpe11g01034 848 Pfam C5HC2 zinc finger 329 381 IPR004198 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01034 - - - csv:101214856 709.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00662 Bpe-Chr9:15252648 Bpe11g01034 Bpe-Chr11:7672353 2.96E-24 dispersed
Bpe11g00675 Bpe-Chr11:5191331 Bpe11g01034 Bpe-Chr11:7672353 7.41E-79 dispersed
Bpe11g01034 Bpe-Chr11:7672353 Bpe15g01335 Bpe-Chr15:21485445 7.01E-41 dispersed
Bpe11g01034 Bpe-Chr11:7672353 Bpe02g01049 Bpe-Chr2:11713484 1.11E-06 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe09g00662 . 1 1230 JUMONJI Transcription Factor Family AT1G08620 53.3 0.0e+00 1218.8
Bpe02g01049 . 34 951 JUMONJI Transcription Factor Family AT1G30810 50.4 2.3e-241 832.0
Bpe09g00662 . 123 701 JUMONJI Transcription Factor Family AT1G30810 56.8 6.9e-185 644.4
Bpe09g00662 . 124 667 JUMONJI Transcription Factor Family AT2G34880 54.4 3.3e-171 599.0
Bpe11g01034 . 49 387 JUMONJI Transcription Factor Family AT2G34880 64.0 1.2e-125 447.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22081 PF02373 JmjC 4.00E-45 CL0029 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01034 Bpe_Chr11 FPKM 18.589743 20.68284 5.819826 5.817732 9.672937 9.274007 9.423549 33.16098 33.909069 33.181114