Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01034 ATGATTTTCATGTTTCAGATCTTAGGTAGATGGGATCCTGATGAAGCATGCAGGCCTATCATTGGGGAAGCACCTGTGTTTTATCCCACGACTGAGGGTGGCGCTACTATAAAGTCATTATTTTTATTTTTGTCTTATTTTCTTGTGTACTATGGAGCTGACTTGGAAACAGGAACATTTGGAAGTGGGTTCCCTAAAGCATCACATTCGCCAACTCAAAGCAATCCTGACAAGTATATGATTTCTGGGTGGAATCTTAACAACTTTCCGCGGTTGCCAGGTTCTGTGTTGAGTTTTGAAGAAAGCAATATTTCAGGAGTTCTAGTGCCGTGGCTTTATGTTGGGATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGATCATCATCTTTACTCGTTAAACTATTTACACTTGGGTGATCCAAAAGTTTGGTACGGAGTTCCTGGAAGCCATGCTTCTACTTTGGAAGCTGCAATGAAAAAGCATTTGCCAGATTTGTTCGAAGAACAGCCAGATTTACTACATGAATTGGTTACTCAGTTATCACCTTCGGTTCTCAAATCAGAAGGAATACCAGTATGCCGTGCTGTTCAAAATGCAAGGGAGTTTGTTCTGACATTTCCAAGGGCATACCATGCTGGATTTAATTGTGGTTTCAATTGCGCCGAGGCAGTGAATGTGGCACCTGTTGATTGGTTGGCTCATGGGCAAAATGCTGTGGAGCTCTATAGTGAGCAGTCTCACAAGACGTCAGTGTCTCATGATAAATTATTATTTGGTTCAGCTGAGGCAGCTGCTCAAGCTCTTTCAGAGGTTTATGCTCTTGGGAAGGAAACTCCATGGAAATATGTGTGTGGTATAGATGGGGCCCTTACAAAGGCAGTTAAGGAAAGGGTCGAGATGGAGAAGGAGAGGTTAGTTTTTCTTTCAGCTCATTTGAAGGTGAAAAAGATGAAAAGAGAAGTCGATTGTGAGGACAGGGAATGCTTTTCTTGCTTTTACGACTTACACTTGTCTGCAACTGGCTGCAAGTGCTCCCCCAATCGTTTTTCATGCCTTAAACACACGGATAACTTTTGTTCGTGTGAAATAGATCAAAGATTTGTCCTCGTTCGCTATACCATAGATGAACTCGACTCTCTTGTTGGAGCCTTGGAAGGAGGATTAAGGGCCGCAGAGAACTCTCAAAAAAATTCTTATTCTGATGATTGCGATTCAAATATGGAATCGGGGAGTAAATTATCCAATTCTAAGTCGGAAAATTCAGTCGAAAGATTTGGCATTTACGAAGAAACTGCAAAGAGGATGAGAATAGATCTTAATTACAGTTCATTTGGTCATAAAAACGTGGCGAGGAAATTGGATCTTAACTGTATATACTCCAGTCATCCATCGTCAGAAGTACAGTCAGATTCTTGGAACGGAAGCTCATCTCACTATCCAAGTGGTACTAGTAAAGACGTCCTCGAAGGTGGAACCGCGGACCCAACACGAGAAAAAGATATAGTTGTAGGCACGAATCGAAGAGGACTCTTAATCGATTTGAATCTTGATATTACGTGGGAGGGAGAGGAAAATGGGTATCTTGGTTCATCTGATCATAAACTAATCAAAGATGAAGTCGAGAATTTGCATAGATGGGACAGAGATTCATCTGCTTTTTCAGGCACCAATCGTTCTTCAGGTTTTGGAGATGGTGGGAGTAGAGATTTGCCGTTTGATTTTGATTTTGCATTTCATCCACTTTCACATACTACTTCAATGCCGAGTCGCTCCTTGAAAATGGAAGCTCTAGATCCCTCTGAGCCCGCGCTAATAGACATCGGAACTCTGGTGTTTGGAAACTGTTGGTGCAGTAAGCAGGCTATATTTCCGAAAGGTAAAAATATATGTCCAAAATTTGAATTTTCAAATTGTTTTATTTTGAATTTTCTTCTTCAATCTTTGTCTATATTTTCAGGATATAGAAGCCGTGTTAAATTCAACAGTCTGATTGATCCAACGGTTAGCTGTAGCTATGTATCGGAAGTTCTCGATGGAAGGTCTCTTCGGCCTCTATTCAAGGTCACGTCTGACGAATTTCCGTGGGAGTCTTTTGAAAACTCCTCCCCCGACGGATGCTGGGAAATGGTAATGCAGAGCATAAACCGAGAAATTAATAGAAGGAAACGGCCCCGTGGTTTGCAGCCATTGCAGAAAGTGAATGGTCTTCAAATGTTTGGTTTGCTCTCCCCACATATTAGACAGAGAATCGAGGCGCTGGATCCACATCATAGATTCTTGCTGTATTGGATTAATCGGCACAGCAATGGCAGTACAAAAATCGATTATCCGTCGAGTCGCACACCAGAAGCATCCAGAACAAGGACGTTGGATATCGGTGTTCGTCGAGGGGACGAAGAAAAAGTGCTGGGGGGGCTCCTGAACAAGGCAAGTAAAAGAGAGCTGAGCTTAATGCACAAAATCTTCTGCAATGAACATATAAATGATGAATTGAGATTGGGTCTGGCATCAACTATTGAGGAGAAGCTACGTTTTTTTGAATAA 2547 41.85 MIFMFQILGRWDPDEACRPIIGEAPVFYPTTEGGATIKSLFLFLSYFLVYYGADLETGTFGSGFPKASHSPTQSNPDKYMISGWNLNNFPRLPGSVLSFEESNISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHLGDPKVWYGVPGSHASTLEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGIPVCRAVQNAREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLAHGQNAVELYSEQSHKTSVSHDKLLFGSAEAAAQALSEVYALGKETPWKYVCGIDGALTKAVKERVEMEKERLVFLSAHLKVKKMKREVDCEDRECFSCFYDLHLSATGCKCSPNRFSCLKHTDNFCSCEIDQRFVLVRYTIDELDSLVGALEGGLRAAENSQKNSYSDDCDSNMESGSKLSNSKSENSVERFGIYEETAKRMRIDLNYSSFGHKNVARKLDLNCIYSSHPSSEVQSDSWNGSSSHYPSGTSKDVLEGGTADPTREKDIVVGTNRRGLLIDLNLDITWEGEENGYLGSSDHKLIKDEVENLHRWDRDSSAFSGTNRSSGFGDGGSRDLPFDFDFAFHPLSHTTSMPSRSLKMEALDPSEPALIDIGTLVFGNCWCSKQAIFPKGKNICPKFEFSNCFILNFLLQSLSIFSGYRSRVKFNSLIDPTVSCSYVSEVLDGRSLRPLFKVTSDEFPWESFENSSPDGCWEMVMQSINREINRRKRPRGLQPLQKVNGLQMFGLLSPHIRQRIEALDPHHRFLLYWINRHSNGSTKIDYPSSRTPEASRTRTLDIGVRRGDEEKVLGGLLNKASKRELSLMHKIFCNEHINDELRLGLASTIEEKLRFFE 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7672353 7676798 - Bpe004360.1 Bpe11g01034 111179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01034 848 SUPERFAMILY Clavaminate synthase-like 84 264 - -
Bpe11g01034 848 Pfam F/Y rich C-terminus 684 763 IPR003889 GO:0005634
Bpe11g01034 848 MobiDBLite consensus disorder prediction 396 418 - -
Bpe11g01034 848 Pfam JmjC domain, hydroxylase 111 227 IPR003347 -
Bpe11g01034 848 MobiDBLite consensus disorder prediction 464 501 - -
Bpe11g01034 848 MobiDBLite consensus disorder prediction 464 484 - -
Bpe11g01034 848 SMART cupin_9 78 244 IPR003347 -
Bpe11g01034 848 ProSiteProfiles JmjC domain profile. 78 244 IPR003347 -
Bpe11g01034 848 PANTHER LYSINE-SPECIFIC DEMETHYLASE 49 841 - -
Bpe11g01034 848 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 49 841 - -
Bpe11g01034 848 Gene3D Cupin 38 275 - -
Bpe11g01034 848 Gene3D - 602 759 - -
Bpe11g01034 848 SMART fyrc_3 686 774 IPR003889 GO:0005634
Bpe11g01034 848 ProSiteProfiles FYR domain FYRC motif profile. 682 768 IPR003889 GO:0005634
Bpe11g01034 848 SMART fyrn_3 609 680 IPR003888 GO:0005634
Bpe11g01034 848 Pfam C5HC2 zinc finger 329 381 IPR004198 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00662 Bpe-Chr9:15252648 Bpe11g01034 Bpe-Chr11:7672353 2.96E-24 dispersed
Bpe11g00675 Bpe-Chr11:5191331 Bpe11g01034 Bpe-Chr11:7672353 7.41E-79 dispersed
Bpe11g01034 Bpe-Chr11:7672353 Bpe15g01335 Bpe-Chr15:21485445 7.01E-41 dispersed
Bpe11g01034 Bpe-Chr11:7672353 Bpe02g01049 Bpe-Chr2:11713484 1.11E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22081 PF02373 JmjC 4.00E-45 CL0029 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01034 - - csv:101214856 709.138