Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe11g01042 | ATGAAGGAGAGTGGGAAGAAACAGGGAGCAGCGTCGCCATGCGCAGCGTGTAAGTTGCTGAGAAGAAGGTGCGGAGAAGAGTGTGTGTTTGCTCCTTATTTTCCGGCTGATCAACCCCACAAGTTTGCTTCTGTTCACAAGGTCTTTGGGGCAAGCAATGTCAACAAGATGTTGCAGGAGTTGCCAATGCATCAACGAGGTGATGCTGTGAGTAGCTTGGTCTACGAGGCCAATGCGAGAGTGAGAGATCCGGTCTATGGCTGTGCTGGGGCCATATCTTCTCTGCAACAACAAATCGATCTTCTTCAAACCCAGCTCGCGTTGGCTCGGGCCGAGGTGGTGCACCTTCGGATGCGCCAGGGTGCTCCGTTTTCGAGCCACAGTGCGAGCCCGACGAGCCCGAGTAATAGCGGTTCGCCTTCTTCTAGGCTCTTGGGTTCCCATGCCAAGCCCATATTTGAAATGGACTTGATTGTGGATCATGCCAATGCCATGAGTGATTCTATTTGGTAA | 513 | 52.44 | MKESGKKQGAASPCAACKLLRRRCGEECVFAPYFPADQPHKFASVHKVFGASNVNKMLQELPMHQRGDAVSSLVYEANARVRDPVYGCAGAISSLQQQIDLLQTQLALARAEVVHLRMRQGAPFSSHSASPTSPSNSGSPSSRLLGSHAKPIFEMDLIVDHANAMSDSIW | 170 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 7773367 | 7774568 | - | Bpe004368.1 | Bpe11g01042 | 111187 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe11g01042 | 170 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
| Bpe11g01042 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 1 | 165 | - | - | |
| Bpe11g01042 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 165 | - | - | |
| Bpe11g01042 | 170 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - | |
| Bpe11g01042 | 170 | Coils | Coil | 92 | 112 | - | - | |
| Bpe11g01042 | 170 | MobiDBLite | consensus disorder prediction | 122 | 145 | - | - | |
| Bpe11g01042 | 170 | MobiDBLite | consensus disorder prediction | 123 | 144 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe04g01798 | Bpe-Chr4:23446699 | Bpe11g01042 | Bpe-Chr11:7773367 | 3.93E-60 | dispersed | |
| Bpe07g00503 | Bpe-Chr7:10002124 | Bpe11g01042 | Bpe-Chr11:7773367 | 3.07E-32 | dispersed | |
| Bpe08g01408 | Bpe-Chr8:14943027 | Bpe11g01042 | Bpe-Chr11:7773367 | 3.39E-55 | dispersed | |
| Bpe11g01042 | Bpe-Chr11:7773367 | Bpe15g01223 | Bpe-Chr15:20852868 | 1.19E-47 | dispersed | |
| Bpe15g00729 | Bpe-Chr15:17804876 | Bpe11g01042 | Bpe-Chr11:7773367 | 1.10E-22 | dispersed | |
| Bpe11g01042 | Bpe-Chr11:7773367 | Bpe15g01174 | Bpe-Chr15:20604486 | 1.24E-62 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 22082 | PF03195 | LOB | 1.20E-42 | No_clan | Bpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe11g01042 | - | - | tcc:18596365 | 256.144 |