Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01042 ATGAAGGAGAGTGGGAAGAAACAGGGAGCAGCGTCGCCATGCGCAGCGTGTAAGTTGCTGAGAAGAAGGTGCGGAGAAGAGTGTGTGTTTGCTCCTTATTTTCCGGCTGATCAACCCCACAAGTTTGCTTCTGTTCACAAGGTCTTTGGGGCAAGCAATGTCAACAAGATGTTGCAGGAGTTGCCAATGCATCAACGAGGTGATGCTGTGAGTAGCTTGGTCTACGAGGCCAATGCGAGAGTGAGAGATCCGGTCTATGGCTGTGCTGGGGCCATATCTTCTCTGCAACAACAAATCGATCTTCTTCAAACCCAGCTCGCGTTGGCTCGGGCCGAGGTGGTGCACCTTCGGATGCGCCAGGGTGCTCCGTTTTCGAGCCACAGTGCGAGCCCGACGAGCCCGAGTAATAGCGGTTCGCCTTCTTCTAGGCTCTTGGGTTCCCATGCCAAGCCCATATTTGAAATGGACTTGATTGTGGATCATGCCAATGCCATGAGTGATTCTATTTGGTAA 513 52.44 MKESGKKQGAASPCAACKLLRRRCGEECVFAPYFPADQPHKFASVHKVFGASNVNKMLQELPMHQRGDAVSSLVYEANARVRDPVYGCAGAISSLQQQIDLLQTQLALARAEVVHLRMRQGAPFSSHSASPTSPSNSGSPSSRLLGSHAKPIFEMDLIVDHANAMSDSIW 170
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 7773367 7774568 - Bpe004368.1 Bpe11g01042 111187
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01042 170 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Bpe11g01042 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 165 - -
Bpe11g01042 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 165 - -
Bpe11g01042 170 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Bpe11g01042 170 Coils Coil 92 112 - -
Bpe11g01042 170 MobiDBLite consensus disorder prediction 122 145 - -
Bpe11g01042 170 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01798 Bpe-Chr4:23446699 Bpe11g01042 Bpe-Chr11:7773367 3.93E-60 dispersed
Bpe07g00503 Bpe-Chr7:10002124 Bpe11g01042 Bpe-Chr11:7773367 3.07E-32 dispersed
Bpe08g01408 Bpe-Chr8:14943027 Bpe11g01042 Bpe-Chr11:7773367 3.39E-55 dispersed
Bpe11g01042 Bpe-Chr11:7773367 Bpe15g01223 Bpe-Chr15:20852868 1.19E-47 dispersed
Bpe15g00729 Bpe-Chr15:17804876 Bpe11g01042 Bpe-Chr11:7773367 1.10E-22 dispersed
Bpe11g01042 Bpe-Chr11:7773367 Bpe15g01174 Bpe-Chr15:20604486 1.24E-62 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22082 PF03195 LOB 1.20E-42 No_clan Bpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01042 - - tcc:18596365 256.144