Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01066 ATGTCCACCATTAGAGCATATGCGAAGTTCAATGAAGCCGAGCAGATGATGCTCGATGCCCGCCGGAGAACAAGAAAGAGAATTGTCATTATCGTTTCATCTTCTGTTGTTCTCGTGGGCGTTGTTCTAGCTGCTGTTTTTGGAACTGCAAGCTCCAGAAATGGAGGAAAATCTAACAATGGTGGAAACGCTAACCCTCTCTCCACCTCTATTAAAGCAGTCTGCGACGGTCTCTCCTCGTCGGAAGCCTCTCTAACTGACACCATTGATGACCTCCGAACATGGCTGAGCTCCGCGACAACGTATCAACAAACCTGCATAGATGGGTTGGAAGACGTTAGTGAAGCATTGAAAAATTCCATTTCCGGGTACTTGAGAAACTCAACTGAATACTCAAGCAACGGGCTGGCCATCGTCACGTTGCTGTCAAGCTTCACGGGGTCTCTGAAACTCCGGCGACTAATGGGGGAGCCGGAGTGGGTGAGCCCGGCGACGAGGCGGCTGTTGCAGAGCGATTTGAGGAACCAGGCGGATATAGTGGTGGCCAAAGATGGATCGGGGAAGTACGACACGATAAGGAGAATGACTTCCACCATTGTTTCTGCAAGTCTGAACTTCGTTGACGGCACTCCTACTTTCTCCTCTGCAACTTTCGCTGCAATGGGGCAAAACTTCATAGCAAGAGACATGGGTTTCCGCAACACCGCCGGAGCTAGCAAGTACCAAGCCGTCGCCCTAATGTCCGCCTCCGATCAATCCATCTTCTACCGCTGCCTCTTCGACGCCTACCAAGACACTCTCTACACCCATTCCAACCGCCAGTTCTACAGGGAATGCAACATCTACGGCACCGTCGATTTCATCTTCGGAAACTCCGCCGTCGTCATCCAAAGTTCGTTCATATTCCCCCGATTGCCGATGCAAGGCCAGCAAAACACGATCACGGCTCAGGGAAAGTTTGATCCCAATCAAAACACCGGCATTTCGATTCAAAACTGTACGGTCATGCCGTTCGGAAACCTAGGTTCTACTCAAACATACCTTGGTCGGCCGTGGACGAACTACTCGACGACCGTTTATATTCAGAATAATCTGGGGTCTTTGATTAACCCCGCCGGATGGTTACCATGGGTCGGAGGCCTCTTCCGGGTCGTGACAGTCGGCGGTTCGGCTCCGAGCACCATCTTCTACGCCGAGTTTCAGAATTTCGGAGCTGGGTCTTCGACTGCGAAGAGAGTGAAGTGGAAGGGAGTAAGGCATATTAATGGAGCTCAGGCGTTTCTTAAAGAAGCTGGCTGGGCTGATAGTGGACGTGTAATTGCTTGCACCCAACCCAGACGTTTGGCAGTTCAGGCTGTTGCTTCGAGGGTGGCTGAAGAGATGGATGTCAAGCTTGGAGAGGAAGTTGGTTATACAATCCGATTCGAAGATCTTACAACTCCGGGTATAACTAGGGTAAAATTTCTGACAGATGGAGTCTTGCTAAGGGAAATGATGGATGATCCTCTTTTGACCAAATATAGTGTAATAATGGTTGATGAGGCTCACGAGAGATCCATATCAACAGACATGCTATTGGGTCTTTTAAAAAAGATCAAACGAGTTCGACCTGAGCTGCGGTTAATTATATCTTCTGCTACAATTGAAGCACAATCCATGGCTTCTTTCTTTCAGACCAGCAAAAGACACCGGGAAGTCGAAAATGATGTGTCTGTACCAAAGGCGGAGCCAGCTATTCTATCAGTGGAGGGTAGAGGGTTTAATGTACAAATTCTTTATATTGAGGAGCCTGTTTCCAACTATATTCAAGCTGCTGTGTCAACAGTAATGTCGATTCATGATAAGGAAGCTACAGGAGACATTCTTGTATTTCTTACTGGCCAAGATGATATTGAGACAGCTGTTAATTTACTCACAGATGAAGCCCGGAACATAGGCAGAGATTCTCCAGGATTGATTATTTTGCCTCTGTACTCTGGACTTCCTCGTTCTGACCAGGAATTGATATTTTCACCCACTCCTAGAGGGAAGAGGAAAGTAGTGATTTCAACAAATATAGCAGAGACATCATTGACCCTGGAGGGCATTGTCTATGTTGTTGATAGTGGATTTTCAAAGCAGCGGTTCTACAATCCGATATCAGATATTGAAAGCCTCGTATTGGCACCGATATCAAAGGCATCTGCTAGGCAAAGGGCTGGTAGAGCTGGAAGAGTTCGACCAGGGAAGTGCTATAGACTATACACAGAGGAATACTTCACTAAAGAGATGTTATCTGGGGGAATTCCAGAAATTCAGAGATCTAATTTAGCTTCTTGTGTAATTCAATTGAAAGCATTGGGAGTCGATAATATACTTGGCTTTGACTGGCCAGCATCTCCATCTCATGAATCTATGGTTCGGGCTCTTGAAGTGCTTTATTCGCTCGGAATCTTAGATGATGATGGCAAGCTTACTTCACCCTTGGGATTTCAAGTTACAGAGATTCCATTAGAACCAATGATCTCAAAAATGATAATAACTTCAAGCCAGCTTGGATGCTCGGAGGAGGTTCTTACCATTGCTGCTTCTATTTGGATTTCGAATAGAGGAGCGCAGAAAGAACTTGATGAAGCAAGGTTAAGATTTGCTGCTGCTGAGGGTGACCATGTGACCTTCCTGAATGTGTACAAAGGATTTCTACAATCTGGGAAATCTTCTCAATGGTGTCATAAAAACTGTGTCAATTACCATGCGATGAAAAAAGTTATTGAGGTTAGAGATCAGCTCAGAAAAACAGCGCAAAGACTAGGCATCGTCTTGAAATCGTGCCAAGGAGATACGACGGCACTCAGAAAGGCAGTGACTGCCGGATTTTTTGCCAATGCTTGTCGGTTAGAAGCATTCAGCCACAGTGGGATGTACAAGACTGTTAGAGGCTCGCAAGAAGTCTATATTCACCCCTCTTCAGTCTTATTCAGAGTGAATCCAAAGTGGGTTATCTATCACTCGCTTGTGTCCACCGATCGACAATACATGCGCAATGTTATTTCAATCGAGCCGTCATGGTTAACCGAGGCTGCACCCCATTTTTTCCAACACAAGAACCATAGTCTCATGCCCCACTAA 3108 46.36 MSTIRAYAKFNEAEQMMLDARRRTRKRIVIIVSSSVVLVGVVLAAVFGTASSRNGGKSNNGGNANPLSTSIKAVCDGLSSSEASLTDTIDDLRTWLSSATTYQQTCIDGLEDVSEALKNSISGYLRNSTEYSSNGLAIVTLLSSFTGSLKLRRLMGEPEWVSPATRRLLQSDLRNQADIVVAKDGSGKYDTIRRMTSTIVSASLNFVDGTPTFSSATFAAMGQNFIARDMGFRNTAGASKYQAVALMSASDQSIFYRCLFDAYQDTLYTHSNRQFYRECNIYGTVDFIFGNSAVVIQSSFIFPRLPMQGQQNTITAQGKFDPNQNTGISIQNCTVMPFGNLGSTQTYLGRPWTNYSTTVYIQNNLGSLINPAGWLPWVGGLFRVVTVGGSAPSTIFYAEFQNFGAGSSTAKRVKWKGVRHINGAQAFLKEAGWADSGRVIACTQPRRLAVQAVASRVAEEMDVKLGEEVGYTIRFEDLTTPGITRVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDMLLGLLKKIKRVRPELRLIISSATIEAQSMASFFQTSKRHREVENDVSVPKAEPAILSVEGRGFNVQILYIEEPVSNYIQAAVSTVMSIHDKEATGDILVFLTGQDDIETAVNLLTDEARNIGRDSPGLIILPLYSGLPRSDQELIFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIESLVLAPISKASARQRAGRAGRVRPGKCYRLYTEEYFTKEMLSGGIPEIQRSNLASCVIQLKALGVDNILGFDWPASPSHESMVRALEVLYSLGILDDDGKLTSPLGFQVTEIPLEPMISKMIITSSQLGCSEEVLTIAASIWISNRGAQKELDEARLRFAAAEGDHVTFLNVYKGFLQSGKSSQWCHKNCVNYHAMKKVIEVRDQLRKTAQRLGIVLKSCQGDTTALRKAVTAGFFANACRLEAFSHSGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLVSTDRQYMRNVISIEPSWLTEAAPHFFQHKNHSLMPH 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7995301 8014547 - Bpe004393.2 Bpe11g01066 111211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01066 1035 Pfam Helicase associated domain (HA2) 802 859 IPR007502 GO:0004386
Bpe11g01066 1035 PANTHER OS05G0389800 PROTEIN 426 1029 - -
Bpe11g01066 1035 SMART ha2_5 801 887 IPR007502 GO:0004386
Bpe11g01066 1035 Pfam Pectinesterase 196 424 IPR000070 GO:0030599|GO:0042545
Bpe11g01066 1035 SMART ultradead3 406 582 IPR014001 -
Bpe11g01066 1035 Pfam Plant invertase/pectin methylesterase inhibitor 78 138 IPR006501 GO:0004857
Bpe11g01066 1035 Coils Coil 862 882 - -
Bpe11g01066 1035 Gene3D - 168 407 IPR012334 -
Bpe11g01066 1035 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 605 781 IPR001650 -
Bpe11g01066 1035 CDD PMEI-like_3 67 144 - -
Bpe11g01066 1035 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 508 517 IPR002464 -
Bpe11g01066 1035 Gene3D - 586 760 IPR027417 -
Bpe11g01066 1035 CDD SF2_C_RHA 587 748 - -
Bpe11g01066 1035 Gene3D - 420 584 IPR027417 -
Bpe11g01066 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 909 IPR027417 -
Bpe11g01066 1035 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 144 IPR035513 -
Bpe11g01066 1035 Pfam Helicase conserved C-terminal domain 613 739 IPR001650 -
Bpe11g01066 1035 PANTHER ATP-DEPENDENT RNA HELICASE 426 1029 - -
Bpe11g01066 1035 SMART helicmild6 640 740 IPR001650 -
Bpe11g01066 1035 ProSitePatterns Pectinesterase signature 2. 281 290 IPR033131 -
Bpe11g01066 1035 SUPERFAMILY Pectin lyase-like 176 425 IPR011050 -
Bpe11g01066 1035 Gene3D - 789 938 - -
Bpe11g01066 1035 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 944 1023 IPR011709 -
Bpe11g01066 1035 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 143 IPR035513 -
Bpe11g01066 1035 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 424 566 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01066 Bpe-Chr11:7995301 Bpe13g00528 Bpe-Chr13:12558610 1.11E-163 dispersed
Bpe13g00524 Bpe-Chr13:12532976 Bpe11g01066 Bpe-Chr11:7995301 3.90E-101 dispersed
Bpe15g00249 Bpe-Chr15:13802286 Bpe11g01066 Bpe-Chr11:7995301 1.29E-81 dispersed
Bpe03g01191 Bpe-Chr3:30809385 Bpe11g01066 Bpe-Chr11:7995301 8.62E-74 transposed
Bpe11g01066 Bpe-Chr11:7995301 Bpe02g01000 Bpe-Chr2:9977321 1.31E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01066 K13117 - qsu:112019177 996.112