Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01082 ATGAGGCTTTCTTCAGCTGGTTGTAGTCCTCGATCCCGTGAAGGAGAGAATAAGGTCTTAAATTCTGAGCTATGGCATGCTTGTGCTGGTCCTCTGGTTTCTCTACCTGCAATAGGAAATAGAGTTGTGTATTTTGCTCAAGGTCATAGTGAACAAGTTACTGCCTCAACGAACAAGGCAGTGGACACACATATCCCAAACTATCCGAGCTTACCACCTCAACTTATTTGCCAACTTCACAATGTGACTATGCATGCAGATCTTGAGACAGATGAAGTGTACGCTCAAATGACATTGCAGCCGCTAAGTCAACAAGAGCAAAAGGAAACTTACCTTCCAGCTGAGTTGGGTGCTCCTAGTAAACAACCCACAAATTATTTTTGCAAAACCTTAACTGCGAGTGATACGAGTACTCATGGAGGTTTCTCTGTTCCTCGCCGGGCGGCTGAAAAAGTGTTTCCTCCATTGGATTTCTCTCAGCAGCCCCCTGCTCAAGAATTAATGGCCAGGGATCTTCATGACAATGAATGGAAATTTAGACATATATTTCGTGGGCAACCTAAAAGGCATCTCCTTACCACTGGATGGAGTGTTTTTGTGAGTGCTAAAAGGCTTGTTGCTGGAGATTCTGTGATCTTCATCTGGAATGAAAAGAATCAATTACTCCTTGGCATTCGACGCGCTAATCGACCGCAAACGATGATGCCTTCTTCAGTTTTATCATGTGATAGCATGCATTTGGGCCTTCTTGCTGCTGCCGCTCATGCAGCCGCAACAAATAGTCGATTCACCATATTTTATAACCCAAGGGCAAGCCCAACTGAATTTGTAATACCGTTTACCAACTACGTAAAGGCAGTCTACAACACTCGTGTTTCTGTTGGAATGCGGTTTAGGATGATGTTCGAAACGGAAGAATCAAGTGTTCGTCGCTATATGGGTACGATTACCGGGATTAGTGACTCGGATCCGCGGTGGGCAAATTCACATTGGCGCTCGGTCAAGGTTGGATGGGACGAGTCAACTGCAGGAGAGAAGCAGCCAAGAGTGTCGTTGTGGGAGATTGAACCATTGACGACGTTCCCAATGTATCCTCCTCCGTTTTCCCTTCGGCTAAAGCGGCCATGGCCTGCTGGTTTACCCTCCTTCAATGGAATCAAAGAAAATGATCTGGGAATGAATTCTACCCACTTGTGGCTAGGTGGAGATAATGAATCTCGGAACTTTAATGGAGTTTCGCCATGGATGCAACCGAGGCTTGATTCTTCCATGCTCGGTCTGCAATCTGATGTGTATCAATCCATAGCTGCTTCTGCAGCACTGGAGAAGATGAAGATGATAAACCCATCCAAATTACCTTTCCAATTTCAATATTCTCCTCAAGCTCATCTGACCTTCCATCCGAACACGGCAGAAAATGGACCTCATCAGGCCTTCCTTCCAACTATGGTGAAAAACGGACCTGATTCTCAACCCAAGATTCAAACTCGGCCTCAAATTTTTCAGCAAAAATTACAGATTCCTAATGAAAGATTGGGGACTGATTCTTATCATGGTATATTGAGTTCATTTCCTCCAAATGAAGATGATTCATCTCATCTACTGATGAACCTTCAAAGAAATAACGGTCTGATTCCTTCTTCAACTTGGCCTTCTAAGCGGGCTGCTCTCGATCCTCTATTTCCATTTTTACTTCCTCAAGTAGAAGAAGAACATTTGGTGTCATTGCCACCATTTCCGGGTCGAGAGTGCTCGATCAATCAACAGAACCATCTTCTTTATGGTTTGAATATCGAACCAAAAGGTTCACCATTTTGTTCTAATTTCATGGCTTCCAATAGTAGTGATTACCCAGATAATGGAGTAATAACACCTTCCACTTCCATTGACAATCCGGGATTCTTGTCTGCAAAAAACATGTCCCAAGAAGTCAACCCGTCATCCAGAAACTTCGTTAAGGTTTATAAATCAGGGTCCTTTGGTAGATCATTGGACATTACCAAGTTTAATAGCTACCACGCGCTACACAGTGAGCTCGCTCAAATGTTCAGCTTGGATAGCATGTTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTCGTTGATCAGGAGAATGAAATTCTTCTTCTCGGTGATGAGCCGTGGCCGGAGTTCGTGAATCACGTGTGGTGTATAAAAATATTTTCGCCTCAAGAAGTGCTCGAAATGGGAAAAGACGGCGCAAAGCTTTTGAATACAGCATCAGTTCAGAGGCTCTCAGTTGGAAGTTGCGATGAGAATGTGATCGGACAAAATTCGAGAAATGTGAGCAGCGTAATAACTTCCGGTGGGTCCGTCGACAACTGA 2349 44.32 MRLSSAGCSPRSREGENKVLNSELWHACAGPLVSLPAIGNRVVYFAQGHSEQVTASTNKAVDTHIPNYPSLPPQLICQLHNVTMHADLETDEVYAQMTLQPLSQQEQKETYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTMMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRASPTEFVIPFTNYVKAVYNTRVSVGMRFRMMFETEESSVRRYMGTITGISDSDPRWANSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPMYPPPFSLRLKRPWPAGLPSFNGIKENDLGMNSTHLWLGGDNESRNFNGVSPWMQPRLDSSMLGLQSDVYQSIAASAALEKMKMINPSKLPFQFQYSPQAHLTFHPNTAENGPHQAFLPTMVKNGPDSQPKIQTRPQIFQQKLQIPNERLGTDSYHGILSSFPPNEDDSSHLLMNLQRNNGLIPSSTWPSKRAALDPLFPFLLPQVEEEHLVSLPPFPGRECSINQQNHLLYGLNIEPKGSPFCSNFMASNSSDYPDNGVITPSTSIDNPGFLSAKNMSQEVNPSSRNFVKVYKSGSFGRSLDITKFNSYHALHSELAQMFSLDSMLEDPLRSGWQLVFVDQENEILLLGDEPWPEFVNHVWCIKIFSPQEVLEMGKDGAKLLNTASVQRLSVGSCDENVIGQNSRNVSSVITSGGSVDN 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8124146 8129767 + Bpe004407.1 Bpe11g01082 111227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01082 782 SMART B3_2 127 229 IPR003340 GO:0003677
Bpe11g01082 782 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bpe11g01082 782 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bpe11g01082 782 Gene3D - 291 362 - -
Bpe11g01082 782 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Bpe11g01082 782 Gene3D - 645 738 - -
Bpe11g01082 782 SUPERFAMILY CAD & PB1 domains 644 724 - -
Bpe11g01082 782 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 604 760 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bpe11g01082 782 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 484 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bpe11g01082 782 PANTHER AUXIN RESPONSE FACTOR 6 604 760 - -
Bpe11g01082 782 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Bpe11g01082 782 Pfam AUX/IAA family 608 733 IPR033389 -
Bpe11g01082 782 CDD B3_DNA 126 227 IPR003340 GO:0003677
Bpe11g01082 782 Gene3D - 125 228 IPR015300 -
Bpe11g01082 782 PANTHER AUXIN RESPONSE FACTOR 6 1 484 - -
Bpe11g01082 782 ProSiteProfiles PB1 domain profile. 649 733 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00619 Bpe-Chr8:5031688 Bpe11g01082 Bpe-Chr11:8124146 0 dispersed
Bpe11g01082 Bpe-Chr11:8124146 Bpe11g01233 Bpe-Chr11:9210760 0 dispersed
Bpe01g00841 Bpe-Chr1:15864973 Bpe11g01082 Bpe-Chr11:8124146 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22084 PF02309 AUX_IAA 1.90E-06 CL0072 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01082 - - nnu:104610814 1045.03