Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01109 TTTGGGTTGCGAGGTAAGGAAATGGATACGACTCCTGTTTCTTCTCCAGGTGCAAGTAACATGAGGCCTCGCAACGGTAAGGCGACCTCCATTACCGACAGAGACAAAACCATTGCTCAGTATAACGCAGACGCTCGGCTTTTTTCTGATTTTGAGAAATCTACCGAGTCCGGTGAGTCTTTTAACTACTCGAGATCAGTTTTGCAGAGTTGTCAATCTGTTCCCGAAGAACAAATTACTGCTTATTTATCGATAATCCAAAGGGGTGGTCTAATTCAGCCATTTGGTTGCATGATCGCTGTCGAAGAAACCGGTCTAAAAATTATCGGTTATAGTGAGAATTGCTCTGATCTATTGGGTTTAAAGTCTCAATTAGAGTTAACACAGGCAAAAAGTCTGATTGGAATTGATGTTAGAACACTTTTTACTCCTTCATCAAGTATTTCTTTAGCGAACGCTGCCATGTCCAGGGAGATTTCATTTCTAAACCCGATATGGGTTTATTCTAATACATCCCAGAATCCATTTTATGCAATATTGCATAGAATTGACGTGGGAATTGTGATTGATTTGGAGCCTGCAAAGTCGGTTGATCCTGCGTTATCACTTGCAGGGGCAGTTCAGTCTCAGAAACTAGCTGTTCGTGCAATTTCTAGGCTGCAGTCTCTCCCTGGAGGTGATATTGGTGCTTTATGTGACACTGTTGTGGAAGATGTTCAGAAGCTTACTGGGTATGACAGGGTGATGGCCTACAAATTCCACGATGATGATCATGGCGAGGTTGTTTCAGAGCTTAGAAGATCAGACTTAGAGCCTTACCTTGATTTGCATTATCCTTCTACAGATATTCCCCAAGCTGCTCGTTTTCTGTTCAAGCAGAACAGAATCCGAATGATCTGCGATTGCCATGCAAAACCCATTAAGATCATTCAAAGTGAGAAGCTAAAACAGTCCCTATGCTTAGTTAATTCAACACTTCGATCACCTTATGGTTGTCATGCTCAATATATGATCAACATGGGCTCTATTGCATCACTAGTAATGGCTGTCCTCGTAAGTAGTAACAACGGGACAAAGCTTTGGGGGCTCGTCGTTTGCCACCACACTTCACCCCGCTACCTCCCCTTCCCTCTTCGTTATGCTTGCGAGTTACTTATGCAGGCATTTGGGATGCAGCTCTACATGGAGTTTCAATTGGCATCACAGTTAATGGAAAAGAACATTCTCAAAACTCAAACCTTAATGTCAGACATGCTTCTCCGAGATGGTCCTTACAGTCTAGTGACTCAATCTCCAAGTATTATGGATCTCGTGAAATGTGATGGAGCTGCATTGTACTACAACGGAACATGTTGGCTTTTGGGTGTGACACCATCCGAATCACAAGTAATGGATATTGCAGAGTGGCTTCTTAATGATCATCAGGATTCTACCGGGTTGAGTACAGATACTTTTGCGGATTCTGGCTATCCCGGCGCAGCTTCACTTGGAGATGCAGTGTGTGGCATGGTAGCCGCGAGGATCAACTCAAAGGATTTCTTATTCTGGTTCAGATCTTGTGCAGCGAAAGAAGTGAAATGGGCCGGAGCAAAGCATCATTCCGAAGATAAGGACGATGGTGGAAAATTGCACCCAAGATCGTCTTTCAATGCCTTTCTCAAAGTCGTCAAAAATAGAAGTTTTCCTTGGGAGGTTTCGGAAATTAACGCCATTCACACTCTGCAACTTATAATGAGAGATTCATTGCAGAACTTCAAAGACACGAGTACAAAAGGCCTAATTACTGCACAGCTGAGTGGTTCTGAGATGCAGAGGGTAGATGAACTTAGTTCGGCTGCATGGGAAATGCTTAGATTGATCGAGACAGCCACAGTTCCCATTTTTGGGGTTGATTCAGCTGGTCTGATCAATGGATGGAATGCTAAAATTTCTGAACTGACTGGATTAGAATCAAGTAACGCCATGGGAAAATCTTTGGTGGGTGAGGTTACTCATGTGGATTCCCGTCAAACAGTTGGAAGTGTCCTGGGTCGTGCTTTGAAAGGCGAAGAAGAAAGAGATGTTGAGTTGAAACTGAGAAGTTTTACACGTGATAGAAGAGAATCCGCCTTGTATATTGTGGTCAATTCCTGCACAACCCGGGACTATAAGAACCAAGTCACTGGCGTTTGCTTCGTAGGTCAAGATATTACATCGGAGAAAATCGAAATGGATAAATTTATTCAACTACAAGGTGATTACAAGGCTATAATTCATAGTCTCAACCCCTTTTTTCCACCCATATTTGCCTCTGATGTGAATGCTTGCTGCTCTGAGTGGAATGCAGCCATGGAAAAACTAACTGGTTGGAAAAGAGATGAAGTTATAGGAAAGATTCTACCTGGAGAAGTTTTTGGAACGTTCTGTCGATTGAAAGGCCAAGATACGTTGACCAAGTTTATGATTTCACTTTACAGAAGCATTCTTGGTCAAGAAACTGAGGAGCTTCCATTTGGATTTTTCAATCGAAAAGGAATATTTGTGAAGGTACTCTTAACGGCAAACAAGAGGGCGGACGGAGCTGGAGATATCATCGGCTGTTTCTGCTTCTTGCAGATTGCTGAGCATGTTACTGAAGAACCCGTGGAAGAGGAGGGAGAGAGCTTTTTGCAATTGACGGAGTTGGCGTATATTCGGCAGGAGATAAACAATCCGTTGAACGGTATTAGATTTATCCACAAGCTTCTCAAGAGTAGCTGCGACGAAGAAAATCAGAAACTATTTCTTAATACCTGTTATGCATGTGAGAGACAGATCACGATGATCATGGAGGACAAGAATTTGAGAACCATAGAAGGAGGAAGTATAGAGCTAAACGTTGAAGAATTTCTGCTGGGGGATGTTTTTTATGCAATTATCGGTCAAATCATGATCCTCGTGAGGAAGAAGCAGCTACAGCTTCAACACGAAATCCGGAAAGATATCAAATCATTAATCCTTTATGGCGATCAAATTAAGTTACAGCTAGTTCTGTCCGATTTTTTGCTCAATGTAGTGAATTACGCACCTTCTCCTGGTGGGTGGGTCGAAATCAACATCTCAACGCGTATAATATCGATCAAAGATGGCCAAAACAAGATCCACTTGCAGGTCAGAATGACACACCCTGGTGAAGGTCTGCCATCAACGTTGGTCCAAGAAATGTTTGGAGAAGGAGAGCAATGCACTTCACATGAAGGTCTTGGGCTAAACCTCTCAAGAGAACTTCTGAGCAAGATGAATGGAAATGTTCATTATGTTAGAGAACACAATAAATGCTATTTCCTCGTCGATCTCGAGCTTCAAATGAAGAGAGATATACCCGAAGAGCCTAAAGCTACTCATGAGATTGTTGAAACTACTGAGGTTCAGTCAGGATTCGTTGAAGTTGGCTATATATCAGGGGCTCATGGTATTGAAGGGGAAATTCGTGTAAAACCTAGTACTGGTTTTCCTGAATTGCGATTTTCTGAGCCTGGCAAAAGATGGTTGAAGCAAGAAACTCTAGGAAGGGAAAGCATTCGGGAAGTTGAACTGATGGAAGGAAGGGGACACCCAGGTCAAAAGTGCTGGATACTAAAGTTTCAAGGAATTGAAACTGCAGAAGAGGCTAAGCTACTTACTGGGTCAAAATTACTCGTGAGGGAAGAAGATCGACCAGAGTTGGAGGAAGGTGATTTTTATACCCATGATCTCCTTGGCATGAGAGTCATACTTAAGGAAACTGAGGAGCTTTTGGGAACTGTTACTAATGTCTACAACAGTGGAGGGAATGATCTTTTACAGGTCATGGTGAATCATTCAAAAGATGCTGGAGTGTCTGGACGTACTGTGTGGATACCTTTTGTTGAAGCAATAGTTCCAGATGTTGATGTTATCAGAAGGGAAATGCATATTACTCCACCAAAGGGGCTTTTAGAGTTGAATTTACGTGCAGATGAGAGATCAAAAAAAGAAAGGCGTCAACTTGAATGGAAAGAGAGAAAAAAGTTCCAAAAGCGACTCATAGCAGCAAAAAAGAAACTTTGTGAAATGGAGCAGCAACATGTATTTCACGGCTTCAAATTTGGCCAAAAATGGACGATGACTGAATTATCGAATGCCGTAGCATGTGAGACCCTAAAGAATTCCTTGAAAATTTCAGAGGAATGCTTCGTTTCAAATGGAAAAAAGGAGACGCAAAATGACATTGTTAGTTTTAAGGAGGAGGGACTTCGTCTCACATCAGACAAAAAAACTGCCGTTGTTTTAGTAGTAAATGAAGAGGGTTGGGAGGATATCTCTGATATTGCCAAGAGTGGAAGCACTAGGAATCCATCTTCTCTCCTTCAGACTCTGCTTGATGATGCTCAGAGATTTGCGCATATTGAATACAGGCAATTCGTCCCCCTGATATTGGTTTGCTCGGCTAGCAGACTTTCTTCAATTCAAAAGTTGTTCTTGGATAATGATTACTTTACTTTTGACTCAAAAAAAGTGTGGTTCTTGGAAGAAGAGAAGCTTCCGGTAGTCGGCCATTTGGTTGAGGAACAGAAATGGAGAAAAATGTTGATGAAATCACCATGGGAAATTCTTCGTTCACCTGTTGGATCTGGAGGAGTAATGAACTTGCTTTTGTCTCACAATCTCATTGATGATATCGGAGAAATGGGTATTGACTATGTTGAGGTGTGCTCAAGTAGTCAAAAATACGTGGGAATGAATTTGCTACTACTTGGGTTTCTTAATTCATGCAAAGCCGATGTCGGAATCCAACTCTTCGAAAACACGAACAATGAAGAAAGTTTTGACATGATATTCTCGATTCAGTTTTTAAAGAAGTTGGCGAAACAGATGAATAAACTCCAATTCTACGCAGTTCCAAACTCAAATTCTCACGTTGAGATGGTTGATAAAGAATGGATCGATGTTGAGCCTTCAACAGCCAACTCAAACGAGCTTCGATGCTCGATTCTCAGTTCCTTAAACGTATGTTCAATGGATAAGGTATGTGCTATAAAGATTGGTGAATAG 5031 41.86 FGLRGKEMDTTPVSSPGASNMRPRNGKATSITDRDKTIAQYNADARLFSDFEKSTESGESFNYSRSVLQSCQSVPEEQITAYLSIIQRGGLIQPFGCMIAVEETGLKIIGYSENCSDLLGLKSQLELTQAKSLIGIDVRTLFTPSSSISLANAAMSREISFLNPIWVYSNTSQNPFYAILHRIDVGIVIDLEPAKSVDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQKLTGYDRVMAYKFHDDDHGEVVSELRRSDLEPYLDLHYPSTDIPQAARFLFKQNRIRMICDCHAKPIKIIQSEKLKQSLCLVNSTLRSPYGCHAQYMINMGSIASLVMAVLVSSNNGTKLWGLVVCHHTSPRYLPFPLRYACELLMQAFGMQLYMEFQLASQLMEKNILKTQTLMSDMLLRDGPYSLVTQSPSIMDLVKCDGAALYYNGTCWLLGVTPSESQVMDIAEWLLNDHQDSTGLSTDTFADSGYPGAASLGDAVCGMVAARINSKDFLFWFRSCAAKEVKWAGAKHHSEDKDDGGKLHPRSSFNAFLKVVKNRSFPWEVSEINAIHTLQLIMRDSLQNFKDTSTKGLITAQLSGSEMQRVDELSSAAWEMLRLIETATVPIFGVDSAGLINGWNAKISELTGLESSNAMGKSLVGEVTHVDSRQTVGSVLGRALKGEEERDVELKLRSFTRDRRESALYIVVNSCTTRDYKNQVTGVCFVGQDITSEKIEMDKFIQLQGDYKAIIHSLNPFFPPIFASDVNACCSEWNAAMEKLTGWKRDEVIGKILPGEVFGTFCRLKGQDTLTKFMISLYRSILGQETEELPFGFFNRKGIFVKVLLTANKRADGAGDIIGCFCFLQIAEHVTEEPVEEEGESFLQLTELAYIRQEINNPLNGIRFIHKLLKSSCDEENQKLFLNTCYACERQITMIMEDKNLRTIEGGSIELNVEEFLLGDVFYAIIGQIMILVRKKQLQLQHEIRKDIKSLILYGDQIKLQLVLSDFLLNVVNYAPSPGGWVEINISTRIISIKDGQNKIHLQVRMTHPGEGLPSTLVQEMFGEGEQCTSHEGLGLNLSRELLSKMNGNVHYVREHNKCYFLVDLELQMKRDIPEEPKATHEIVETTEVQSGFVEVGYISGAHGIEGEIRVKPSTGFPELRFSEPGKRWLKQETLGRESIREVELMEGRGHPGQKCWILKFQGIETAEEAKLLTGSKLLVREEDRPELEEGDFYTHDLLGMRVILKETEELLGTVTNVYNSGGNDLLQVMVNHSKDAGVSGRTVWIPFVEAIVPDVDVIRREMHITPPKGLLELNLRADERSKKERRQLEWKERKKFQKRLIAAKKKLCEMEQQHVFHGFKFGQKWTMTELSNAVACETLKNSLKISEECFVSNGKKETQNDIVSFKEEGLRLTSDKKTAVVLVVNEEGWEDISDIAKSGSTRNPSSLLQTLLDDAQRFAHIEYRQFVPLILVCSASRLSSIQKLFLDNDYFTFDSKKVWFLEEEKLPVVGHLVEEQKWRKMLMKSPWEILRSPVGSGGVMNLLLSHNLIDDIGEMGIDYVEVCSSSQKYVGMNLLLLGFLNSCKADVGIQLFENTNNEESFDMIFSIQFLKKLAKQMNKLQFYAVPNSNSHVEMVDKEWIDVEPSTANSNELRCSILSSLNVCSMDKVCAIKIGE 1676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8295645 8306415 + Bpe004433.1 Bpe11g01109 111254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01109 1676 Gene3D - 1228 1316 - -
Bpe11g01109 1676 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Bpe11g01109 1676 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 995 1104 IPR003594 -
Bpe11g01109 1676 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 950 1099 IPR036890 -
Bpe11g01109 1676 Gene3D - 946 1113 IPR036890 -
Bpe11g01109 1676 ProSiteProfiles PAC domain profile. 686 742 IPR000700 -
Bpe11g01109 1676 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1341 1673 IPR029044 -
Bpe11g01109 1676 ProSiteProfiles PAS repeat profile. 612 683 IPR000014 -
Bpe11g01109 1676 SUPERFAMILY PYP-like sensor domain (PAS domain) 86 195 IPR035965 -
Bpe11g01109 1676 CDD PAS 760 865 IPR000014 -
Bpe11g01109 1676 Pfam RimM N-terminal domain 1135 1224 IPR002676 GO:0006364
Bpe11g01109 1676 SMART pas_2 614 681 IPR000014 -
Bpe11g01109 1676 SMART pas_2 745 815 IPR000014 -
Bpe11g01109 1676 CDD PAS 623 730 IPR000014 -
Bpe11g01109 1676 Gene3D PAS domain 86 330 - -
Bpe11g01109 1676 ProSiteProfiles Histidine kinase domain profile. 890 1109 IPR005467 -
Bpe11g01109 1676 ProSiteProfiles PAS repeat profile. 746 791 IPR000014 -
Bpe11g01109 1676 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 726 IPR035965 -
Bpe11g01109 1676 Gene3D - 402 575 IPR043150 -
Bpe11g01109 1676 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 227 387 IPR016132 -
Bpe11g01109 1676 PRINTS Phytochrome signature 327 348 IPR001294 GO:0006355|GO:0009584
Bpe11g01109 1676 PRINTS Phytochrome signature 615 631 IPR001294 GO:0006355|GO:0009584
Bpe11g01109 1676 PRINTS Phytochrome signature 512 531 IPR001294 GO:0006355|GO:0009584
Bpe11g01109 1676 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Bpe11g01109 1676 PRINTS Phytochrome signature 142 164 IPR001294 GO:0006355|GO:0009584
Bpe11g01109 1676 PRINTS Phytochrome signature 242 261 IPR001294 GO:0006355|GO:0009584
Bpe11g01109 1676 PRINTS Phytochrome signature 427 447 IPR001294 GO:0006355|GO:0009584
Bpe11g01109 1676 PRINTS Phytochrome signature 545 563 IPR001294 GO:0006355|GO:0009584
Bpe11g01109 1676 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Bpe11g01109 1676 PRINTS Phytochrome signature 634 649 IPR001294 GO:0006355|GO:0009584
Bpe11g01109 1676 SUPERFAMILY GAF domain-like 207 393 - -
Bpe11g01109 1676 SUPERFAMILY Translation proteins 1133 1227 IPR009000 -
Bpe11g01109 1676 Pfam PRC-barrel domain 1231 1312 IPR027275 -
Bpe11g01109 1676 SMART gaf_1 227 407 IPR003018 GO:0005515
Bpe11g01109 1676 SUPERFAMILY PRC-barrel domain 1233 1311 IPR011033 -
Bpe11g01109 1676 Pfam Phytochrome region 416 584 IPR013515 GO:0006355|GO:0009584
Bpe11g01109 1676 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1329 1661 IPR029044 -
Bpe11g01109 1676 Gene3D RimM 1124 1226 IPR036976 GO:0006364
Bpe11g01109 1676 MobiDBLite consensus disorder prediction 12 33 - -
Bpe11g01109 1676 Pfam PAS fold 746 865 IPR013767 GO:0006355
Bpe11g01109 1676 Pfam PAS fold 616 730 IPR013767 GO:0006355
Bpe11g01109 1676 Gene3D PAS domain 614 734 - -
Bpe11g01109 1676 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1114 - -
Bpe11g01109 1676 MobiDBLite consensus disorder prediction 1 33 - -
Bpe11g01109 1676 TIGRFAM 16S_RimM: 16S rRNA processing protein RimM 1134 1311 IPR011961 GO:0005840|GO:0006364|GO:0043022
Bpe11g01109 1676 Gene3D - 208 558 IPR029016 -
Bpe11g01109 1676 CDD HATPase_Phy-like 994 1107 IPR044767 -
Bpe11g01109 1676 Pfam GAF domain 227 396 IPR003018 GO:0005515
Bpe11g01109 1676 CDD HisKA 888 938 IPR003661 GO:0000155|GO:0007165
Bpe11g01109 1676 Pfam PAS fold 81 194 IPR013654 GO:0006355
Bpe11g01109 1676 SMART HisKA_10 883 947 IPR003661 GO:0000155|GO:0007165
Bpe11g01109 1676 SUPERFAMILY GAF domain-like 405 583 - -
Bpe11g01109 1676 PANTHER PHYTOCHROME E 34 1114 - -
Bpe11g01109 1676 TIGRFAM sensory_box: PAS domain S-box protein 619 734 IPR000014 -
Bpe11g01109 1676 Hamap Ribosome maturation factor RimM [rimM]. 1133 1311 IPR011961 GO:0005840|GO:0006364|GO:0043022
Bpe11g01109 1676 SMART HKATPase_4 995 1109 IPR003594 -
Bpe11g01109 1676 Pfam His Kinase A (phospho-acceptor) domain 888 945 IPR003661 GO:0000155|GO:0007165
Bpe11g01109 1676 Gene3D PAS domain 759 874 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01109 Bpe-Chr11:8295645 Bpe13g00697 Bpe-Chr13:13599291 0 dispersed
Bpe11g01109 Bpe-Chr11:8295645 Bpe02g00962 Bpe-Chr2:8964442 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01109 K12123 - zju:107413117 1579.3