Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01121 ATGACGTCTGGAGCGAGGATGCCGACTTGGAAGGAGAGGGAGAACAATAAGAGGAGGGAGAGAAGGCGGAGAGCGATCGCGGCGAAGATCTTCACTGGTTTGAGAATGTATGGAAACTACAAGCTCCCCAAGCACTGCGATAACAATGAAGTTCTCAAAGCTCTCTGTAACGAGGCTGGATGGACAGTTGAAGACGACGGTACTACCTATAGAAAGGGTTGCAAACCGGTAGAAGCCATGGACATCACAGGTGGGTCTGCGATTGCAAGTCTTGGCTCATCACACCAGCAGAGCCCGTGCGCGTCTTATGATCCAAGTCCTCCTTCATCTTCCTTTCCACCAAGTCCAAGTTCATCTCATTATTCTGTGAAAGCCAATGAAATATATGATGCTAATTCCCTCATCCCATGGCTGAAAAACCTCTCATCAGGGTCTATTTCATCCTCATCTAAGATGGCACACCATCGTTACATCCCTAGTGGATCCATAAGTGCCCCAGTCACTCCTCCTTTGAGCTCCCCAACGGCTCGATCTCCTAGAATAAACAACTGGGACGATCCTAAATCCAGTGCAACCTGTGATGTTCAACAGTTTTCTTATATGCCCTCATCTACCTCACCAAGTCCTGGCCGCACAATTCTCTCTGATTCGCGATGGCTAAATGGTGTTCAAATCCCTCAAAGTGGGCCATCCTCACCCACATTCAGCTTTGTTTCTAGAAACCCATTTGGATTTAGAGAAGAGGCAATGTCAGGTGGAGGGTCAAGAATGTGGACCCCAGGTCAAAGTGGGACATGTTCTCCTGCTGTTGCTGCGGGTGTTGATCAAACCTCGGATGTCCCAATGGCAGATGGAATGGCAGCTGAGTTTGCGTTTGGGAGTAACACAACCGGATTGGTCAAACCTTGGGAAGGAGAGAGGATTCACGAGGAATGCATTTCTGATGATCTTGAACTCACTCTTGGAAACTCAAAAACCAGGTTAGATTGA 990 48.18 MTSGARMPTWKERENNKRRERRRRAIAAKIFTGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEDDGTTYRKGCKPVEAMDITGGSAIASLGSSHQQSPCASYDPSPPSSSFPPSPSSSHYSVKANEIYDANSLIPWLKNLSSGSISSSSKMAHHRYIPSGSISAPVTPPLSSPTARSPRINNWDDPKSSATCDVQQFSYMPSSTSPSPGRTILSDSRWLNGVQIPQSGPSSPTFSFVSRNPFGFREEAMSGGGSRMWTPGQSGTCSPAVAAGVDQTSDVPMADGMAAEFAFGSNTTGLVKPWEGERIHEECISDDLELTLGNSKTRLD 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8371659 8374555 - Bpe004447.1 Bpe11g01121 111266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01121 329 MobiDBLite consensus disorder prediction 89 118 - -
Bpe11g01121 329 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 327 IPR033264 GO:0003700|GO:0006351|GO:0009742
Bpe11g01121 329 MobiDBLite consensus disorder prediction 165 188 - -
Bpe11g01121 329 MobiDBLite consensus disorder prediction 1 21 - -
Bpe11g01121 329 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 327 - -
Bpe11g01121 329 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 142 IPR008540 -
Bpe11g01121 329 MobiDBLite consensus disorder prediction 164 188 - -
Bpe11g01121 329 MobiDBLite consensus disorder prediction 89 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01121 - - - pvy:116128228 473.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00402 Bpe-Chr2:2617186 Bpe11g01121 Bpe-Chr11:8371659 2.95E-33 dispersed
Bpe09g00267 Bpe-Chr9:1962330 Bpe11g01121 Bpe-Chr11:8371659 8.48E-112 dispersed
Bpe10g00104 Bpe-Chr10:1582635 Bpe11g01121 Bpe-Chr11:8371659 1.32E-38 dispersed
Bpe11g01121 Bpe-Chr11:8371659 Bpe05g00764 Bpe-Chr5:21000444 1.16E-13 dispersed
Bpe11g01121 Bpe-Chr11:8371659 Bpe03g00874 Bpe-Chr3:28501935 2.63E-122 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g00402 BCT 2 279 BZR Transcription Factor Family AT1G75080 63.9 2.2e-84 309.3
Bpe04g00207 BCT 33 317 BZR Transcription Factor Family AT1G75080 63.6 1.6e-82 303.1
Bpe06g00056 . 19 296 BZR Transcription Factor Family AT1G75080 57.1 3.4e-77 285.4
Bpe10g00104 . 27 306 BZR Transcription Factor Family AT1G75080 55.4 3.4e-77 285.4
Bpe02g00402 BCT 2 277 BZR Transcription Factor Family AT1G19350 63.4 1.1e-85 313.5
Bpe04g00207 BCT 33 318 BZR Transcription Factor Family AT1G19350 60.6 1.9e-80 296.2
Bpe06g00056 . 19 295 BZR Transcription Factor Family AT1G19350 58.0 3.4e-77 285.4
Bpe10g00104 . 27 305 BZR Transcription Factor Family AT1G19350 57.4 3.7e-76 282.0
Bpe06g00056 . 1 297 BZR Transcription Factor Family AT3G50750 58.0 4.0e-76 281.6
Bpe10g00104 . 2 300 BZR Transcription Factor Family AT3G50750 56.1 9.8e-75 276.9
Bpe11g01121 . 77 327 BZR Transcription Factor Family AT4G18890 54.7 2.1e-53 205.7
Bpe03g00874 CCT 122 332 BZR Transcription Factor Family AT4G18890 50.7 2.3e-44 175.6
Bpe11g01121 . 1 327 BZR Transcription Factor Family AT1G78700 66.8 9.4e-109 390.2
Bpe03g00874 CCT 1 332 BZR Transcription Factor Family AT1G78700 66.4 6.7e-107 384.0
Bpe09g00267 CCT 1 312 BZR Transcription Factor Family AT1G78700 66.6 1.8e-96 349.4
Bpe10g00104 . 27 200 BZR Transcription Factor Family AT4G36780 75.7 3.5e-61 231.9
Bpe06g00056 . 19 196 BZR Transcription Factor Family AT4G36780 72.2 7.8e-61 230.7
Bpe04g00207 BCT 33 212 BZR Transcription Factor Family AT4G36780 55.7 1.6e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22085 PF05687 BES1_N 5.60E-64 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01121 Bpe_Chr11 FPKM 1.340772 1.897629 1.377255 1.569967 37.195396 35.538784 33.567402 0.554387 0.631109 0.5737