Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01122 ATGGCTACTGCGGCAATATTCTCTTCGTTGCGGCGGCGAAGATCGCCGTCCTTAGAGGTTTTGTTAGCTCCAGTCGACCTTAATGATGTAGCGCTTGTACAAACGCTTGCTTTGGTCGCTGCCGATCTTGTTTCGTGTTTTATACAGAAACCGTTCTTCTTTCAGGGCAAAAATTCGAGGTCTCTGATACGGAAAGTGGACGTTTTTCTCGTGTTCTTGCAGTATCTGAAGGACTCCGGCGTGAGTTTGCCTGCCACGGCAGTGATTTGCTTCAAAGAGCTTTACTTGTTACTGTATCGATCGAAGATCCTCCTCGATTATTGCTCCCAATCGTGTAAGTTATGGCTACTGCTTCAAAATCATCCTATTTCAGTGCATTTCCATGATTTAAACCTGGAAATTTTGACCATTCTGGACGTGTTTCCTTTTGACGAAGTTAAATTGGATATAGACATCAGAGAGCAGATTAATCTATTACAGAACCAACTGAGAAGGGGGAAATTGTACATAGAGAAGCGCGATGAGGTGCTGCGAATTCAGTTTCTTTCCTTTCTCCATGACTTTGAGAATGGAAAGATTCCGGATTCTGGGAAAATGAAGGAGTTCTTCGTGGAAAGATTGGAGATAAAGACTGCAAACAATTGCAGAGCTGAAATTGAGCATTTGGAAGAGCAGATTGTGAATCATGATGGAGATATCGAGCCAACAATATCGGTTCTTAGTGGATTTGTTGCACTTACGAGATATAGTAGATTTTTGCTGTTCGGGTTTCACGGAGAGGAATTAGAATCAAGCGATAGAAATCAGAAGATAAGAAATAGATTGATTAAGCAAGAAACTGCAGAAACTCTCGTAACAATCCCAAAAGATTTTTGCTGTCCAATCTCGCTGGAATTGATGACAGACCCAGTGATTATAGCGACAGGACAGACATATGATCGGTGTTCAATAGCTCGGTGGATTGAAGAAGGGCATTGTAATTGTCCGAAAACAGGGCAAATGCTTGTCCACAATAATCTTGTTCCAAATCGAGCTTTGAGGAATTTGATCATGCAGTGGTGCTCTGCCCATGGAGTTGCTTATGATCCACCAGAAGGCATGGATTCTTCTGCAGAGAAGCTTGCTGCAGCTTCCTCCTATAGAGCTGCAGTGGAGGCCAACCGAGCAACAACTCAGCTTCTGATCCAACAGCTTGCAAATGGGTCACAAGAGGGGAAGACCATAGCTGTGCAAGAAATACGATTATTGGCAAAAACTGGAAAAGAAAACCGTGCCTTCATAGCAGAAGCCGGGGCCATTCCCCATCTTCTAAATCTGCTTTCTTCTCCAAACCATGTTGCTCAAGAGAATTCAATCACTGCAATGCTTAATCTTTCGATCTACGACAAGAACAAGAGCCAAATCATGGAGGAAGAAGGGTGTTTAAGATCGATAGTAAGGGTTCTGAAGTCAGGAAAAACAACAGAAGCGAGAGAAAATGCGGCAGCTACGTTGTTTAGCCTTTCAGCCGTCCATAACTACAAGAAAAGAATAGCCAACGAGGAGGGGGCTCTAGAGTGCTTAGCAGGGCTGCTAAAAGAGGGAACTCCGAGAGGGAAAAAAGATGCGGTGACGGCCTTGTTTAATCTTTCAACTCATGCTGAAAATGGTGCGAAATTGATTTCGGCAGGTGCAGTGAAAGCACTAGTTGGTGCATTGACAGACGATGGGGTGGCGGAGGAAGCAGCAGGAGCTTTGGCCTTGATTGTTCGTCAACCCATTGGAGCCCAGGCCGTGGGGGAGGAGGAATTATCGGTAGCTGGGCTGACATCAATGATGAGAGGTGGAACGGCAAGAGGGAAAGAGAATGCAGTGGCAGCTCTGCTTGAGCTTTGTCGGACTGGCGGAGTGGCTGCAACTGAGAGGGTGGTAAGAGCTCCAGCTTTAGCCGCTTTGCTCCAAACCCTCTTGTGTACAGGCACAAAACGGGCTCGGAGAAAGGCGGCTTCTCTTGCAAGAATGTTTCAAAGGTGTGAAAATATCACCTTGCATTATAGTGAATTGGGGGTTGGATATGCATTTTCGAGCAATTCAGCTGCAGGGAGAGAGTCGAGCATCGTCAGAGATATGTCGGCTGTGTCAATTCCCATTTCAGTGCCGGTTTCGTAG 2148 45.53 MATAAIFSSLRRRRSPSLEVLLAPVDLNDVALVQTLALVAADLVSCFIQKPFFFQGKNSRSLIRKVDVFLVFLQYLKDSGVSLPATAVICFKELYLLLYRSKILLDYCSQSCKLWLLLQNHPISVHFHDLNLEILTILDVFPFDEVKLDIDIREQINLLQNQLRRGKLYIEKRDEVLRIQFLSFLHDFENGKIPDSGKMKEFFVERLEIKTANNCRAEIEHLEEQIVNHDGDIEPTISVLSGFVALTRYSRFLLFGFHGEELESSDRNQKIRNRLIKQETAETLVTIPKDFCCPISLELMTDPVIIATGQTYDRCSIARWIEEGHCNCPKTGQMLVHNNLVPNRALRNLIMQWCSAHGVAYDPPEGMDSSAEKLAAASSYRAAVEANRATTQLLIQQLANGSQEGKTIAVQEIRLLAKTGKENRAFIAEAGAIPHLLNLLSSPNHVAQENSITAMLNLSIYDKNKSQIMEEEGCLRSIVRVLKSGKTTEARENAAATLFSLSAVHNYKKRIANEEGALECLAGLLKEGTPRGKKDAVTALFNLSTHAENGAKLISAGAVKALVGALTDDGVAEEAAGALALIVRQPIGAQAVGEEELSVAGLTSMMRGGTARGKENAVAALLELCRTGGVAATERVVRAPALAALLQTLLCTGTKRARRKAASLARMFQRCENITLHYSELGVGYAFSSNSAAGRESSIVRDMSAVSIPISVPVS 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8378562 8380709 - Bpe004448.1 Bpe11g01122 111267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01122 715 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Bpe11g01122 715 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Bpe11g01122 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 694 - -
Bpe11g01122 715 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Bpe11g01122 715 CDD RING-Ubox_PUB 291 333 IPR045210 -
Bpe11g01122 715 Coils Coil 212 232 - -
Bpe11g01122 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Bpe11g01122 715 SMART arm_5 546 584 IPR000225 GO:0005515
Bpe11g01122 715 SMART arm_5 462 503 IPR000225 GO:0005515
Bpe11g01122 715 SMART arm_5 505 545 IPR000225 GO:0005515
Bpe11g01122 715 SMART arm_5 420 460 IPR000225 GO:0005515
Bpe11g01122 715 Gene3D - 369 678 IPR011989 -
Bpe11g01122 715 SUPERFAMILY RING/U-box 276 361 - -
Bpe11g01122 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 360 IPR013083 -
Bpe11g01122 715 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Bpe11g01122 715 PANTHER U BOX DOMAIN-CONTAINING 12 694 - -
Bpe11g01122 715 SUPERFAMILY ARM repeat 391 669 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01751 Bpe-Chr4:23181040 Bpe11g01122 Bpe-Chr11:8378562 7.25E-131 dispersed
Bpe11g01122 Bpe-Chr11:8378562 Bpe13g00254 Bpe-Chr13:10503310 2.19E-93 dispersed
Bpe11g01122 Bpe-Chr11:8378562 Bpe11g00764 Bpe-Chr11:5755923 1.28E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01122 - - jre:108979603 952.97