Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01139 ATGTACAAAATAATACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAACAACTTTCTGCCACTATTTATGTAAGCTTTTTTTCTCCACAGCTTCTCTCTCGAAACCCAAAATACCAAAAATACTGATAACAGATCTCTCTCTCTCTCTCTATCTCTCTCAGCACCTTTTTCCCACTACTTATTATAAGCTTCTCTTCCACAGCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGGCTGCGGTAGAAACCAATCAAGATCATGCGCAAGGAATTAAGCTCTTTGGGAAAACAATCACGTTGCATGATAAGCAAGTAAAGGACGGAGATAAAAGGGATGATGATCAGACGGCGGAGAAGAGGCCAGAAAAGATCATCCCTTGCCCTAGATGCAAGAGCATGGAGACTAAGTTCTGTTACTTCAACAACTATAACGTAAACCAGCCTAGACATTTCTGCAAGGGTTGCCAGAGGTACTGGACGGCCGGAGGAGCTCTCCGAAACGTTCCCATCGGAGCTGGTCGCCGGAAAGCAAAACCACCTTGTCAAAACACCATAGGTGGGTTGCCGGGAAGTTACCTTCATGACCCCTCTTCGGTGGCCGTGCACCAGTTTCAGTTAGATGGGGTGGTGGAGGATTGGAAAGTTATGATCAGCCATGGTAGTTTCCGGCAAGCTTTGCCGGTGAAGAGGCGGAGGGACGGCTGTGGAGGTCAAACTTGTTGA 894 42.06 MYKIIPLSLSLSLSLSLTTFCHYLCKLFFSTASLSKPKIPKILITDLSLSLYLSQHLFPTTYYKLLFHSCSLSLSLSLSLSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSLSLSLSLSLSLSLMAAVETNQDHAQGIKLFGKTITLHDKQVKDGDKRDDDQTAEKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPPCQNTIGGLPGSYLHDPSSVAVHQFQLDGVVEDWKVMISHGSFRQALPVKRRRDGCGGQTC 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8475428 8476321 + Bpe004465.1 Bpe11g01139 111284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01139 297 Pfam Dof domain, zinc finger 180 235 IPR003851 GO:0003677|GO:0006355
Bpe11g01139 297 ProSitePatterns Zinc finger Dof-type signature. 184 220 IPR003851 GO:0003677|GO:0006355
Bpe11g01139 297 PANTHER CYCLIC DOF FACTOR 2 142 294 IPR045174 GO:0003700|GO:0006355
Bpe11g01139 297 Coils Coil 84 84 - -
Bpe11g01139 297 ProSiteProfiles Zinc finger Dof-type profile. 182 236 IPR003851 GO:0003677|GO:0006355
Bpe11g01139 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 142 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01139 - - - zju:107410557 231.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00765 Bpe-Chr8:9430318 Bpe11g01139 Bpe-Chr11:8475428 1.84E-53 dispersed
Bpe08g00766 Bpe-Chr8:9450191 Bpe11g01139 Bpe-Chr11:8475428 3.82E-51 dispersed
Bpe11g01139 Bpe-Chr11:8475428 Bpe14g00173 Bpe-Chr14:2111758 1.55E-33 dispersed
Bpe11g01139 Bpe-Chr11:8475428 Bpe02g01093 Bpe-Chr2:14443952 1.45E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g01139 . 145 297 C2C2-Dof Transcription Factor Family AT1G29160 56.9 7.2e-47 183.7
Bpe02g01093 . 12 163 C2C2-Dof Transcription Factor Family AT1G29160 52.0 2.9e-40 161.8
Bpe08g00765 . 8 139 C2C2-Dof Transcription Factor Family AT1G29160 53.9 1.6e-38 156.0
Bpe08g00766 CCT 7 139 C2C2-Dof Transcription Factor Family AT1G29160 51.8 3.0e-37 151.8
Bpe11g01139 . 145 297 C2C2-Dof Transcription Factor Family AT2G34140 53.5 8.5e-45 176.8
Bpe02g01093 . 12 163 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.8e-39 159.1
Bpe08g00765 . 8 103 C2C2-Dof Transcription Factor Family AT2G34140 66.7 3.8e-37 151.4
Bpe04g01330 BCT,CCT,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 66.0 2.0e-42 169.9
Bpe02g00845 CCT,ECH 1 131 C2C2-Dof Transcription Factor Family AT2G37590 61.7 1.4e-38 157.1
Bpe08g01366 . 1 119 C2C2-Dof Transcription Factor Family AT2G37590 54.2 1.3e-36 150.6
Bpe12g00543 . 97 408 C2C2-Dof Transcription Factor Family AT3G47500 51.1 1.8e-73 273.5
Bpe02g00845 CCT,ECH 1 131 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.8e-38 156.4
Bpe15g01111 . 1 118 C2C2-Dof Transcription Factor Family AT5G02460 54.4 1.2e-36 151.0
Bpe02g00845 CCT,ECH 54 140 C2C2-Dof Transcription Factor Family AT3G55370 79.3 1.7e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008695 0 1 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22087 PF02701 zf-Dof 1.70E-31 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01139 Bpe_Chr11 FPKM 56.558578 58.899612 594.912964 594.196716 61.977623 49.18272 61.021877 571.28894 571.77832 611.018616