Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01163 ATGAGCCATACGAAGTTTGCGAATTGCATCAGGTTCTTTGTTGGGATTCTGTTGATCTCCACGCCGCCGTTTTGTTTTGGGGATACTGATCCTCGTGATGTTGCAGCAATCAACGCCCTGTTCGTTGCTCTTGGCTACCCGCCTCTTCCAGGATGGCTTCTTGTTGGTGGGGATCCTTGTGGACAGAAGTGGATAGGCGTTGACTGTGTTTTCTCGAACATAACGGCAATTCGACTCAGCGGTGCAAATTTGGGAGGCGAGCTCGGTGATAGCTTAGAATTCTTTGAGTCCATTATTTCAATTGATTTCAGCAACAATCATATCAGTGGGCCTATTCCACCTGCGTTACCTCCGACTCTAAGGAACGTGTCGTTGAATAAGAACCTCCTAAGTGGTGAATTACCTGATGCCTTTCAGCAGCTTACTAGTTTGATACATTTAGACATTTCCGATAATGGTTTAAATGGTCAGCTGCCTACATCGCTAGGGAATTTGTTATCTCTGAACACGTTACACTTGCAAAACAATCAACTTTCTGGAACACTTGATGTTCTGCAAGATCTTCCTCTTGCCGATTTGAATATAGAAAATAATTTATTTTCCGGGCCAATACCTGAAAAATTGCTGGCCATTCCAAACTTCAGAAAAGATGGCAATCCTTTCAATACAAGCATCATTCTACCTCCTCCTGCACCCGCTCCAGCTCCAGCCTCATTCCCTTTTCCCGGAGCACCATCTTCAGGGGGATCATCAGGGCAACAGGCAAATGCACCATCTGGCTCCGAAACTTCCGCGTCGAACAAACCTTCAAAATTTTTCACTGCTAAAAGGATCACTTTGCTTGCTATTATAGGGATAGCAATAATAATTTTATTAGGATTCTTGCTTATTCTGTCAAGATGCTTGAGAAAAAGAAAAGAAAAAAACCATAGTGATGCTGCATTTGCGGGTTCTAGAGAAAGGTCCAACTTCAGCGAGTCATCAGTTCTGCAAAGAAATTTAGAAAGAGTTCCAAAGGAGAGTGCTTTAAATTCACGAGATAGATTTGGAATCGACAATAGATTAACTGGTTTTACTCCAAATCTGGAAAAGACACGAGATGTGACAAGAGCAACTGCAGTTGGTTCGTCCCGAAACAAAGAACATGGGTCGGACTCGTATGACATGAGTGGAGTTTTCTTGCCACCACCGCCACCTCCCCCATCATCTCTATTTGAGAAAACTGGAAGTATGGCTGAGCTGCTTACAAGTAGACGGCCGACTAAGACTCTAAATCCTTATTCTGTTCAAGTTTTCTCCATTGCAACGCTTCAGCAGTTTACTGATAGTTTCTCCCAAGAAAATTTTGTTGGAATTGGAATGCTTGGTAGTGTTTATAAGGCTGAACTTCCTAGTGGAAAGATGTTGGCGGTCAAGAAATTGTCCATAGAAGCTTCTAAGTTGCAGAGTGATGAGGAATTTCTGGATATGGTATCGAATATGTCAAAGATTCGACATAATCACGTAGTGGGGCTCGTGGGTTATTGTTCTGAGCATGGCCAACGGCTGGTTGTACATGAATATTGCGAAAATGGGACACTTTACGATGGACTTCATGTGTACGAAGAGATCCATCGGAGACTTTCTTGGAAAATGCGTATCAGGGTGGCACTTGGGGCTGCAAGAGCGCTAGAGTATTTGCACGAGGGCTGTCAACCACCTATAGTGCACAAGAATTTCAAGTCTGCTAATCTCCTCTTCGATGACGAGCTTAAAGTTTATGTATCAGACTGTGGGTTCGCACCTCTCCTATCATCCGGTTTGGCGAGTCAGTCTTTGGGTCGAATACTCATGTCGTCTGGCTACGGAGCCCCTGAGTTTGAGTCGGGAAGTTACTCTTGCAAAAGTGATGTATATAGCTTTGGAGTTGTAATGTTGGAGCTCCTCACTGGTCGTAACTCCTGTGATCGGTCAAGACCTCGAGGGGAACAATTTTTGGTTAGATGGGCCGTTCCTCAGCTCCACGATATTGATAAACTGTCGAGAATGGTCGATCCGTCTCTAAATGGCGTTTATCCCGTCAAGTCGTTATCTCGTTTTGCTGATATAATCTCCTTATGTGTACAGCACGAGGCAGAATTCAGGCCGCCAATGTCGGAAATTGTGCAGGAACTCTTACAAATGACTTAG 2169 44.12 MSHTKFANCIRFFVGILLISTPPFCFGDTDPRDVAAINALFVALGYPPLPGWLLVGGDPCGQKWIGVDCVFSNITAIRLSGANLGGELGDSLEFFESIISIDFSNNHISGPIPPALPPTLRNVSLNKNLLSGELPDAFQQLTSLIHLDISDNGLNGQLPTSLGNLLSLNTLHLQNNQLSGTLDVLQDLPLADLNIENNLFSGPIPEKLLAIPNFRKDGNPFNTSIILPPPAPAPAPASFPFPGAPSSGGSSGQQANAPSGSETSASNKPSKFFTAKRITLLAIIGIAIIILLGFLLILSRCLRKRKEKNHSDAAFAGSRERSNFSESSVLQRNLERVPKESALNSRDRFGIDNRLTGFTPNLEKTRDVTRATAVGSSRNKEHGSDSYDMSGVFLPPPPPPPSSLFEKTGSMAELLTSRRPTKTLNPYSVQVFSIATLQQFTDSFSQENFVGIGMLGSVYKAELPSGKMLAVKKLSIEASKLQSDEEFLDMVSNMSKIRHNHVVGLVGYCSEHGQRLVVHEYCENGTLYDGLHVYEEIHRRLSWKMRIRVALGAARALEYLHEGCQPPIVHKNFKSANLLFDDELKVYVSDCGFAPLLSSGLASQSLGRILMSSGYGAPEFESGSYSCKSDVYSFGVVMLELLTGRNSCDRSRPRGEQFLVRWAVPQLHDIDKLSRMVDPSLNGVYPVKSLSRFADIISLCVQHEAEFRPPMSEIVQELLQMT 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8628323 8632650 + Bpe004488.1 Bpe11g01163 111308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01163 722 PANTHER LEUCINE RICH REPEAT KINASE 2 8 135 - -
Bpe11g01163 722 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 8 135 - -
Bpe11g01163 722 MobiDBLite consensus disorder prediction 366 387 - -
Bpe11g01163 722 SUPERFAMILY L domain-like 31 210 - -
Bpe11g01163 722 ProSiteProfiles Leucine-rich repeat profile. 167 189 IPR001611 GO:0005515
Bpe11g01163 722 Gene3D Transferase(Phosphotransferase) domain 1 522 722 - -
Bpe11g01163 722 ProSiteProfiles Protein kinase domain profile. 444 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g01163 722 Gene3D Ribonuclease Inhibitor 46 227 IPR032675 -
Bpe11g01163 722 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 123 721 - -
Bpe11g01163 722 MobiDBLite consensus disorder prediction 236 268 - -
Bpe11g01163 722 SUPERFAMILY Protein kinase-like (PK-like) 422 718 IPR011009 -
Bpe11g01163 722 MobiDBLite consensus disorder prediction 366 380 - -
Bpe11g01163 722 PANTHER LEUCINE RICH REPEAT KINASE 2 123 721 - -
Bpe11g01163 722 MobiDBLite consensus disorder prediction 316 330 - -
Bpe11g01163 722 MobiDBLite consensus disorder prediction 244 268 - -
Bpe11g01163 722 MobiDBLite consensus disorder prediction 310 330 - -
Bpe11g01163 722 Pfam Protein tyrosine and serine/threonine kinase 448 718 IPR001245 GO:0004672|GO:0006468
Bpe11g01163 722 Gene3D Phosphorylase Kinase; domain 1 409 521 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01163 - - - jre:108992598 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01163 Bpe-Chr11:8628323 Bpe14g00667 Bpe-Chr14:5332924 0 dispersed
Bpe11g01163 Bpe-Chr11:8628323 Bpe07g00562 Bpe-Chr7:12165674 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe07g00562 . 38 780 Strubbelig Receptor Gene Family AT4G03390 62.8 3.3e-213 738.4
Bpe14g00667 . 24 756 Strubbelig Receptor Gene Family AT4G03390 60.8 2.0e-205 712.6
Bpe09g00067 . 302 562 Strubbelig Receptor Gene Family AT4G03390 56.3 2.0e-77 287.3
Bpe09g00067 . 302 577 Strubbelig Receptor Gene Family AT1G78980 68.1 3.6e-105 379.4
Bpe07g00562 . 34 654 Strubbelig Receptor Gene Family AT2G20850 51.1 4.3e-137 485.3
Bpe14g00667 . 20 632 Strubbelig Receptor Gene Family AT2G20850 50.8 7.3e-129 458.0
Bpe09g00067 . 302 560 Strubbelig Receptor Gene Family AT3G13065 65.3 2.3e-93 340.1
Bpe09g00053 CCT 389 684 Strubbelig Receptor Gene Family AT1G11130 50.2 3.0e-80 296.6
Bpe07g00562 . 34 654 Strubbelig Receptor Gene Family AT2G20850 51.1 4.3e-137 485.3
Bpe14g00667 . 20 632 Strubbelig Receptor Gene Family AT2G20850 50.8 7.3e-129 458.0
Bpe07g00562 . 38 780 Strubbelig Receptor Gene Family AT4G03390 62.8 3.3e-213 738.4
Bpe14g00667 . 24 756 Strubbelig Receptor Gene Family AT4G03390 60.8 2.0e-205 712.6
Bpe09g00067 . 302 562 Strubbelig Receptor Gene Family AT4G03390 56.3 2.0e-77 287.3
Bpe09g00067 . 302 560 Strubbelig Receptor Gene Family AT3G13065 65.3 2.3e-93 340.1
Bpe09g00067 . 302 577 Strubbelig Receptor Gene Family AT1G78980 68.1 3.6e-105 379.4
Bpe09g00053 CCT 4 698 Strubbelig Receptor Gene Family AT1G53730 59.9 2.0e-196 682.6
Bpe09g00067 . 300 568 Strubbelig Receptor Gene Family AT1G53730 62.6 3.9e-91 332.8
Bpe09g00053 CCT 15 704 Strubbelig Receptor Gene Family AT3G14350 59.3 2.8e-187 652.1
Bpe09g00067 . 300 579 Strubbelig Receptor Gene Family AT3G14350 57.1 2.0e-76 283.9
Bpe09g00053 CCT 396 703 Strubbelig Receptor Gene Family AT4G22130 63.8 5.4e-112 401.7
Bpe07g00562 . 467 772 Strubbelig Receptor Gene Family AT4G22130 58.6 3.3e-101 365.9
Bpe14g00667 . 445 750 Strubbelig Receptor Gene Family AT4G22130 58.3 8.9e-99 357.8
Bpe11g01163 . 402 721 Strubbelig Receptor Gene Family AT4G22130 55.4 6.4e-97 351.7
Bpe09g00067 . 300 575 Strubbelig Receptor Gene Family AT4G22130 59.9 2.3e-91 333.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63589 PF07714 PK_Tyr_Ser-Thr 8.40E-36 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01163 Bpe_Chr11 FPKM 103.253273 117.325157 94.016342 93.406502 111.0373 144.132919 103.426826 196.55481 208.600632 195.674225