Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe11g01227 | ATGGCACTGGCCAAAGAACCACGCATGGGCTTAGTTCAAACTCCAGACCTTTCTTCCCAAATCTCTTATGAAATTGCACCAGAAATGGGAAAATTTGGTGGGTTTGCAAAGAATACTGGTTTTTTGTTCTGCAGTTCAAACTATCAACCTGATGTTTCTCACTCTGTAATAAACTTCAAGAACCAGCTTGATCAGAATCTAATCCATTTAAACACTGATTCATCTTTACTGAGTTTTGGTCAAACCCAACAATTAGCTCAAGATGATTATTTCAACTGGCCAGCAGAGGGAGAGAGCTTTGTCAATGGCTGTCAATGGAGTCAGATGATCAGTTCTCCTAGCTTACGCCTTTTGCAAGATTTGAACTGCTTCCAAAAAGCTTCTAACTTTAGTCACGTCGACAATCCTTCGAAAGAGAAGCAAAATGGATCACATGGGTCTGGAAACCATTGGCTTTATTCTGAAGAATCGGATGTTATTGTTGAAGAAGAATCAAGAACAGCTCATGAACAAAACCTCCATAAACGGCCCCATTTGATGGATAGCGAGCAATCAATGAAGAAACAGTGCAATAATTCACCGAAGAAGACAACGCCAAAGACCAGTCCATCAAAGGATCCGCAAAGTATAGCAGCAAAGAATCGACGAGAGCGAATTAGCGATCGATTGAAGACTCTTCAAGAACTAGTACCCAATGGCTCCAAGGTTGATTTGGTGACTATGCTGGACAAAGCAATTAGCTACGTCAAATTCCTGCAACTTCAAGTCAAGATTCTGGGTACAGATGAATTTTGGCCAGTTCAAGGAGGGAAAGCTCCTGATATTTCTCAAGTGAGGGAAGCCATTGATGTCATTCTTTCTTCTCAGAGAGACAGAAGCTCGAGCTCAAACAGCGCAATGCTTAGCAATGAAAGTTAA | 918 | 41.39 | MALAKEPRMGLVQTPDLSSQISYEIAPEMGKFGGFAKNTGFLFCSSNYQPDVSHSVINFKNQLDQNLIHLNTDSSLLSFGQTQQLAQDDYFNWPAEGESFVNGCQWSQMISSPSLRLLQDLNCFQKASNFSHVDNPSKEKQNGSHGSGNHWLYSEESDVIVEEESRTAHEQNLHKRPHLMDSEQSMKKQCNNSPKKTTPKTSPSKDPQSIAAKNRRERISDRLKTLQELVPNGSKVDLVTMLDKAISYVKFLQLQVKILGTDEFWPVQGGKAPDISQVREAIDVILSSQRDRSSSSNSAMLSNES | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 9172418 | 9173816 | + | Bpe004554.1 | Bpe11g01227 | 111372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe11g01227 | 305 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 48 | 288 | - | - | |
| Bpe11g01227 | 305 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 203 | 260 | IPR036638 | GO:0046983 | |
| Bpe11g01227 | 305 | MobiDBLite | consensus disorder prediction | 162 | 216 | - | - | |
| Bpe11g01227 | 305 | Gene3D | - | 198 | 259 | IPR036638 | GO:0046983 | |
| Bpe11g01227 | 305 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 203 | 252 | IPR011598 | GO:0046983 | |
| Bpe11g01227 | 305 | MobiDBLite | consensus disorder prediction | 162 | 183 | - | - | |
| Bpe11g01227 | 305 | SMART | finulus | 209 | 258 | IPR011598 | GO:0046983 | |
| Bpe11g01227 | 305 | MobiDBLite | consensus disorder prediction | 184 | 209 | - | - | |
| Bpe11g01227 | 305 | Pfam | Helix-loop-helix DNA-binding domain | 210 | 253 | IPR011598 | GO:0046983 | |
| Bpe11g01227 | 305 | MobiDBLite | consensus disorder prediction | 130 | 150 | - | - | |
| Bpe11g01227 | 305 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 48 | 288 | - | - | |
| Bpe11g01227 | 305 | CDD | bHLH_AtIND_like | 204 | 266 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe11g00010 | Bpe-Chr11:75226 | Bpe11g01227 | Bpe-Chr11:9172418 | 1.19E-157 | dispersed | |
| Bpe11g01227 | Bpe-Chr11:9172418 | Bpe01g00640 | Bpe-Chr1:4315263 | 1.11E-17 | dispersed | |
| Bpe11g01227 | Bpe-Chr11:9172418 | Bpe02g01776 | Bpe-Chr2:20088959 | 1.69E-24 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 22090 | PF00010 | HLH | 9.60E-08 | No_clan | Bpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe11g01227 | - | - | rcu:8262354 | 241.121 |