Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01233 ATGATTGCAGGAGGCGAGAAGAAGTGCTTAAATTCAGAGCTTTGGCATGCATGCGCAGGGCCCCTCGTGTCTCTCCCAACGGGTGGGACTCGTGTCGTCTACTTTCCTCAGGGTCACAGTGAGCAGGTTGCTGCCACGACCAACAAAGAAGTTGATGGGCACATACCCAATTATCCAAACTTACCGCCCCAGCTCATATGTCAGCTTCATAATGTCACAATGCATGCAGACGTGGAAACTGATGAAGTATATGCGCAAATGACATTACAGCCGTTGACACCCCAAGAGCAGAAGGATACATTTCTTCCTATGGAGTTGGGGATCCCAAGCAAACAGCCCACCAACTATTTTTGCAAGACATTGACAGCAAGTGACACAAGCACTCATGGAGGTTTCTCTGTTCCTCGGCGTGCCGCCGAAAAAGTTTTTCCCCCTCTGGATTTTTCACAACAACCCCCCGCGCAAGAACTTAAAGCAAGAGACCTGCATGATGTTGAGTGGAAATTTAGGCACATTTTTCGAGGTCAGCCAAAACGTCATCTTCTTACAACTGGATGGAGCGTGTTTGTTAGTGCTAAAAGACTTGTTGCAGGAGATTCAGTTCTCTTTATCTGGAATGAAAAAAATCAGCTGCTATTGGGCATTCGTCGTGCCACGCGACCTCAAACTGTGATGCCATCATCTGTTCTCTCAAGTGACAGTATGCATATAGGACTTCTTGCTGCCGCGGCTCATGCTGCTGCAACAAATAGCTGTTTCACAGTTTTTTATAACCCTAGGGCTAGTCCATCTGAGTTTGTTATTCCTCTTTCAAAATATGTTAAAGCAGTATTTCATACACGTGTTTCAGTGGGGATGCGCTTTCGAATGCTGTTTGAGACAGAAGAATCAAGTGTTCGAAGGTACATGGGTACAATTACAGGGATAAGTGACCTAGATCCTGTTCGTTGGCCTAATTCCCATTGGCGTTCTGTCAAGGTTGGTTGGGATGAATCGACTGCCGGTGATAGACAACCAAGAGTATCTTTGTGGGAAATTGAGCCATTGACAACGTTTCCCATGTATCCTTCTCTTTTTCCACTCAGACTAAAACGTCCATGGCATCCTGGGGCGTCATCATTGCTGGATTCCAGAGACGATGCAGCTAATGGGCTCATGTGGCTAAGAGGGGGAACAGGGGAACAAGGTCTACAATCTCTCAATTTTCAGTCTGTTGGTATGTTTCCCTGGTTGCAGCAAAGACTTGACTCGCCATTGCTTGTATCGGATCATAATCAGCCTTACCAGACCATGCTGGCAGCTGGTATGCAGAACCTTGGAAGTGGAGATCTTCTAAGACAGCAAATGATCCACCTTCAACAGTCTTTCCAGTATCTTCAGCAGCCTAATAGTCATAATTCGCTTATGCAAATGCCACAGCAATCGCAGCAGCAGATGGGTCAACAATCCGTGCTTCCTAGTGCCCTGCAGTCACAATCACAACCATTGGCAGAGAATTTACCCCAGCACTTCTTGCAGCAAGCATTAAATAATCAATCTGAGCAACAGCCAAATCAGCAATCACACTCTTATCATCCGGCTCTTCAGGCGCAGAGCACCCAGCTTCATCAAGGTCAGCAATCAAATGTGCCTTCGCCAACATTTCCTGGAACAGACTTTATGGATTCGAGCACCAAATTCGCTGCTTCCATGTCCCCAAGGCAAAACGTGCTTGGTTCATCATGTCCCGATACTGGTGGCAGTTTCTCACACTTGTATCGAAGTCAGTCTGGGATATCAGAGCACTCATCCCATCAATCATCAACTTCCAAGTATGGTCATTCTCATGTCAATGTTCAAACTACTTTTGCTTCATTTCCTGGGAGAGACTCTATGGTGGAGCTGAGGAATTGTAACTCGGAGTCACCCAATCCCATTGTTTTTGGTGTGAATATTGATTCCTCTGGGCTTCTACTTCCCAGTGTCCCGAATTTCGCCTCTCATTCTATTGATGCTGATTCCTCCACCATGCCATTAGGGGATTCTGGATTTCAAAGTTCCCTATATGGTTGTGTCCAAGACTCTTCTGAGCTATTACGCAGTTCGGAGCAAGTTGATCCACCAACACCCACCCAGACATTCGTGAAGGTTTACAAGTCGGGATCAGTTGGACGCTCTCTTGACATCTCCCGGTTCAACAGCTACCATGAGTTGCGGGAGGAGTTGGCTCAAATGTTTGGCATTGAGGGAAAGTTGGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTGCTTCTCCTTGGAGATGACCCGTGGGAGGCATTTGTGAACAACGTTTGGTATATCAAGATACTTTCACCTGAAGATTTTCAGAAAATGGGGGAGCAGGCGATTGAATCATTCGGCACAACTATAGGTCAGCGCCCGAATAGTAGCGGTGGGGAAGCTCACTCTGGGTTTCCATCTCTCGGCCCCCTGGAATACTAA 2487 46.84 MIAGGEKKCLNSELWHACAGPLVSLPTGGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELKARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGASSLLDSRDDAANGLMWLRGGTGEQGLQSLNFQSVGMFPWLQQRLDSPLLVSDHNQPYQTMLAAGMQNLGSGDLLRQQMIHLQQSFQYLQQPNSHNSLMQMPQQSQQQMGQQSVLPSALQSQSQPLAENLPQHFLQQALNNQSEQQPNQQSHSYHPALQAQSTQLHQGQQSNVPSPTFPGTDFMDSSTKFAASMSPRQNVLGSSCPDTGGSFSHLYRSQSGISEHSSHQSSTSKYGHSHVNVQTTFASFPGRDSMVELRNCNSESPNPIVFGVNIDSSGLLLPSVPNFASHSIDADSSTMPLGDSGFQSSLYGCVQDSSELLRSSEQVDPPTPTQTFVKVYKSGSVGRSLDISRFNSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPEDFQKMGEQAIESFGTTIGQRPNSSGGEAHSGFPSLGPLEY 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9210760 9218631 - Bpe004560.1 Bpe11g01233 111378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01233 828 SUPERFAMILY DNA-binding pseudobarrel domain 101 246 IPR015300 -
Bpe11g01233 828 MobiDBLite consensus disorder prediction 585 607 - -
Bpe11g01233 828 PANTHER AUXIN RESPONSE FACTOR 8 4 805 - -
Bpe11g01233 828 MobiDBLite consensus disorder prediction 803 828 - -
Bpe11g01233 828 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 805 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bpe11g01233 828 Pfam Auxin response factor 243 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bpe11g01233 828 CDD B3_DNA 116 217 IPR003340 GO:0003677
Bpe11g01233 828 SUPERFAMILY CAD & PB1 domains 697 779 - -
Bpe11g01233 828 Pfam AUX/IAA family 702 788 IPR033389 -
Bpe11g01233 828 Gene3D - 115 219 IPR015300 -
Bpe11g01233 828 Gene3D - 702 794 - -
Bpe11g01233 828 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Bpe11g01233 828 MobiDBLite consensus disorder prediction 468 494 - -
Bpe11g01233 828 MobiDBLite consensus disorder prediction 510 557 - -
Bpe11g01233 828 MobiDBLite consensus disorder prediction 803 817 - -
Bpe11g01233 828 Gene3D - 281 353 - -
Bpe11g01233 828 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Bpe11g01233 828 ProSiteProfiles PB1 domain profile. 705 789 IPR000270 GO:0005515
Bpe11g01233 828 SMART B3_2 117 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00841 Bpe-Chr1:15864973 Bpe11g01233 Bpe-Chr11:9210760 0 dispersed
Bpe04g00699 Bpe-Chr4:4494819 Bpe11g01233 Bpe-Chr11:9210760 2.80E-78 dispersed
Bpe08g00399 Bpe-Chr8:2446058 Bpe11g01233 Bpe-Chr11:9210760 4.18E-94 dispersed
Bpe08g00725 Bpe-Chr8:8707143 Bpe11g01233 Bpe-Chr11:9210760 2.99E-31 dispersed
Bpe11g01082 Bpe-Chr11:8124146 Bpe11g01233 Bpe-Chr11:9210760 0 dispersed
Bpe11g01233 Bpe-Chr11:9210760 Bpe13g01112 Bpe-Chr13:16729661 5.25E-29 dispersed
Bpe04g00237 Bpe-Chr4:1599492 Bpe11g01233 Bpe-Chr11:9210760 2.52E-28 transposed
Bpe11g01233 Bpe-Chr11:9210760 Bpe09g00705 Bpe-Chr9:15634957 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22091 PF02309 AUX_IAA 7.80E-08 CL0072 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01233 - - csv:101208098 1315.06