Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01239 ATGGTGGTTAAAGTATATGGTTCGGTGAGATCAGCCTGCTCGCAGAGGGTTCTAGCCTGCCTTTTGGAGAAAGAGGTGGAGTTTGAGATTGTTCATGTTGATCTCGACGCTGCTGAGCATAAGAAACCTGAGTTTCTTCTTCTGCAACCATTTGGACAAGTTCCTGTCATAGAAGATGGCGACCTCAGGCTTTTTGAATCGAGGGCGATCGTCAGATACTATGCAGCAAAATACCCGGATAGGGGAACCAACCTACTTGGAAAGAGCTTGGAAGAGAGAGCTCTAGTGGATCAATGGCTAGAAGTGGAAGCACAAAACTTCAACGACCTCGTTTACAACATTGTACTTCAACTCCTCATCTTCCCGCGAATGGGGAAACGCACCGACGCGGCACTGGTCCGATCTTGCGAGCAAAAACTCGAGATCGTGCTAGACATCTACAACAAAAGACTCTCTCAAAGCCGGTATCTCGCTGGAGACTCATTCACTTTGGCTGATATGAGCCATCTGCCTGGAATTCGGTATTTAGTAGAGGAGGCCGGATTGAGCGACATGGTGAGCAAGAGAAGCAATGTGAACGCTTGGTGGGAGGATATTTCAAACAGGGCAGCTTGGAAAAAGTTGATGAATATTGCTTTTCATTAG 645 47.13 MVVKVYGSVRSACSQRVLACLLEKEVEFEIVHVDLDAAEHKKPEFLLLQPFGQVPVIEDGDLRLFESRAIVRYYAAKYPDRGTNLLGKSLEERALVDQWLEVEAQNFNDLVYNIVLQLLIFPRMGKRTDAALVRSCEQKLEIVLDIYNKRLSQSRYLAGDSFTLADMSHLPGIRYLVEEAGLSDMVSKRSNVNAWWEDISNRAAWKKLMNIAFH 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9239967 9241167 - Bpe004566.1 Bpe11g01239 111384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01239 214 Pfam Glutathione S-transferase, N-terminal domain 1 73 IPR004045 -
Bpe11g01239 214 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 214 IPR010987 -
Bpe11g01239 214 SUPERFAMILY GST C-terminal domain-like 81 210 IPR036282 -
Bpe11g01239 214 SUPERFAMILY Thioredoxin-like 2 82 IPR036249 -
Bpe11g01239 214 SFLD Main (cytGST) 1 210 - -
Bpe11g01239 214 Pfam Glutathione S-transferase, C-terminal domain 115 202 IPR004046 -
Bpe11g01239 214 SFLD Main.5: Phi-like 1 210 - -
Bpe11g01239 214 Gene3D Glutaredoxin 2 86 - -
Bpe11g01239 214 Gene3D - 87 209 - -
Bpe11g01239 214 PANTHER GLUTATHIONE S-TRANSFERASE F12 2 212 - -
Bpe11g01239 214 PANTHER GLUTATHIONE S-TRANSFERASE RHO 2 212 - -
Bpe11g01239 214 CDD GST_C_Phi 91 209 IPR034347 -
Bpe11g01239 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Bpe11g01239 214 CDD GST_N_Phi 2 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01239 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - twl:119987230 333.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00640 Bpe-Chr5:20225130 Bpe11g01239 Bpe-Chr11:9239967 2.12E-12 dispersed
Bpe05g00738 Bpe-Chr5:20840689 Bpe11g01239 Bpe-Chr11:9239967 9.72E-12 dispersed
Bpe06g00513 Bpe-Chr6:16308344 Bpe11g01239 Bpe-Chr11:9239967 3.48E-54 dispersed
Bpe06g00515 Bpe-Chr6:16310763 Bpe11g01239 Bpe-Chr11:9239967 2.76E-57 dispersed
Bpe11g01239 Bpe-Chr11:9239967 Bpe11g01706 Bpe-Chr11:13332090 1.08E-11 dispersed
Bpe11g01239 Bpe-Chr11:9239967 Bpe07g00034 Bpe-Chr7:301506 2.06E-12 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00515 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 5.1e-63 237.7
Bpe06g00513 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 9.6e-62 233.4
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 2.3e-63 238.8
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT2G02930 55.4 3.3e-62 235.0
Bpe06g00513 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 5.4e-59 224.6
Bpe06g00515 . 5 206 Glutathione S-transferase Gene Family AT1G02950 55.2 9.1e-59 223.8
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.2 8.8e-60 226.9
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 2.0e-59 225.7
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.8 2.3e-60 228.8
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 4.0e-60 228.0
Bpe06g00513 . 1 213 Glutathione S-transferase Gene Family AT2G47730 58.9 1.9e-67 252.7
Bpe06g00515 . 1 213 Glutathione S-transferase Gene Family AT2G47730 57.9 1.2e-66 250.0
Bpe11g01239 . 1 212 Glutathione S-transferase Gene Family AT3G03190 58.5 6.7e-71 263.8
Bpe11g01239 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.3 7.1e-73 270.4
Bpe02g00874 . 3 216 Glutathione S-transferase Gene Family AT3G09270 57.2 9.1e-71 263.5
Bpe12g00457 . 3 226 Glutathione S-transferase Gene Family AT1G74590 50.4 1.6e-65 246.1
Bpe09g00278 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.9 1.0e-90 329.7
Bpe09g00277 . 1 215 Glutathione S-transferase Gene Family AT1G78380 64.7 1.2e-83 306.2
Bpe03g00861 . 2 217 Glutathione S-transferase Gene Family AT1G78380 64.4 4.6e-83 304.3
Bpe09g00278 . 1 214 Glutathione S-transferase Gene Family AT1G78370 63.1 2.7e-80 295.0
Bpe09g00277 . 1 218 Glutathione S-transferase Gene Family AT1G78370 61.9 1.0e-79 293.1
Bpe03g00861 . 2 215 Glutathione S-transferase Gene Family AT1G78370 61.2 3.4e-78 288.1
Bpe09g00278 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.8 4.9e-85 310.8
Bpe09g00277 . 1 217 Glutathione S-transferase Gene Family AT1G78340 63.6 1.5e-81 299.3
Bpe03g00861 . 2 217 Glutathione S-transferase Gene Family AT1G78340 59.7 3.4e-78 288.1
Bpe09g00278 . 1 214 Glutathione S-transferase Gene Family AT1G78320 53.7 1.9e-61 232.3
Bpe03g00861 . 2 215 Glutathione S-transferase Gene Family AT1G78320 52.3 1.5e-58 222.6
Bpe09g00277 . 1 211 Glutathione S-transferase Gene Family AT1G78320 51.2 3.2e-56 214.9
Bpe09g00278 . 1 219 Glutathione S-transferase Gene Family AT1G17180 64.4 1.8e-87 318.9
Bpe03g00861 . 2 220 Glutathione S-transferase Gene Family AT1G17180 63.0 1.2e-83 306.2
Bpe09g00277 . 1 215 Glutathione S-transferase Gene Family AT1G17180 61.9 8.7e-82 300.1
Bpe09g00278 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.6 3.2e-76 281.6
Bpe03g00861 . 4 218 Glutathione S-transferase Gene Family AT1G17190 54.9 9.0e-71 263.5
Bpe09g00277 . 3 215 Glutathione S-transferase Gene Family AT1G17190 54.9 9.0e-71 263.5
Bpe09g00278 . 3 214 Glutathione S-transferase Gene Family AT3G43800 53.7 1.3e-64 243.0
Bpe09g00277 . 3 217 Glutathione S-transferase Gene Family AT3G43800 52.5 1.4e-63 239.6
Bpe03g00861 . 4 215 Glutathione S-transferase Gene Family AT3G43800 50.5 2.1e-59 225.7
Bpe09g00278 . 4 219 Glutathione S-transferase Gene Family AT1G53680 59.2 2.4e-71 265.4
Bpe09g00277 . 4 217 Glutathione S-transferase Gene Family AT1G53680 58.1 2.3e-69 258.8
Bpe03g00861 . 6 220 Glutathione S-transferase Gene Family AT1G53680 54.8 5.0e-69 257.7
Bpe11g01706 . 60 231 Glutathione S-transferase Gene Family AT2G02390 57.0 8.4e-57 216.9
Bpe13g00917 . 58 224 Glutathione S-transferase Gene Family AT2G02390 53.9 4.9e-49 191.0
Bpe11g01706 . 18 230 Glutathione S-transferase Gene Family AT2G02380 60.1 3.7e-72 268.1
Bpe13g00917 . 15 223 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-61 233.4
Bpe05g00640 . 1 244 Glutathione S-transferase Gene Family AT5G41210 67.2 2.6e-95 345.1
Bpe05g00640 . 1 244 Glutathione S-transferase Gene Family AT5G41240 67.2 4.5e-93 339.0
Bpe04g01862 . 8 223 Glutathione S-transferase Gene Family AT5G02780 63.8 1.8e-77 285.8
Bpe04g01862 . 6 225 Glutathione S-transferase Gene Family AT3G55040 67.0 7.9e-83 303.9
Bpe04g01862 . 2 227 Glutathione S-transferase Gene Family AT5G02790 63.4 2.4e-82 302.0
Bpe15g01095 . 1 211 Glutathione S-transferase Gene Family AT1G19570 66.0 1.7e-82 302.4
Bpe04g01694 . 1 233 Glutathione S-transferase Gene Family AT1G19570 57.7 9.6e-78 286.6
Bpe02g01375 . 6 213 Glutathione S-transferase Gene Family AT1G19570 58.9 8.7e-71 263.5
Bpe15g01095 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.0 3.3e-86 314.7
Bpe04g01694 . 1 233 Glutathione S-transferase Gene Family AT1G75270 64.5 3.4e-83 304.7
Bpe02g01375 . 6 213 Glutathione S-transferase Gene Family AT1G75270 58.9 7.9e-72 266.9
Bpe02g01375 . 2 215 Glutathione S-transferase Gene Family AT5G16710 75.7 8.3e-100 360.1
Bpe04g01694 . 3 232 Glutathione S-transferase Gene Family AT5G16710 54.3 2.6e-69 258.8
Bpe15g01095 . 3 210 Glutathione S-transferase Gene Family AT5G16710 56.7 4.4e-69 258.1
Bpe02g00628 . 1 268 Glutathione S-transferase Gene Family AT1G77290 66.5 2.4e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005856 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 1 1 5 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01239 Bpe_Chr11 FPKM 10.725373 13.552974 6.469435 6.472614 21.149916 19.25074 21.140055 8.431342 9.099526 7.780467