Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01266 ATGGCTTCTATGAACTGGCTTGGTTTCTCTCTTTCTCCCCAGGAGTTTTCTTCTCAAGCAGGTGAAGATCATTCTGCCCAAAGCTCGGTTTCACGCCTCGGATTCGACTCCGATGAAATCGCCGGCCATGTCTCCGGCGACTGCTTCGATCACTCTTCTACTCCCTCTCTTATTCTCCCTCCTCCTTTTGAACTTCTTGAATCTTACAACCATCGCCCCAACCAATCTCAAGATTGGAACTTTAAGAGTACGGCGATGAACTCTGACAACAACTACAAAGAAAACTCGTCAGAACTTTCAATTTTAATGGCTACCACTTCATGCAGCAGCCGAAACATCGAAACCCATCATCAACCGAAGCTCGAAAACTTTCTGGGCCGCGAAAACCCAAACTCCTTCATATACGCAGCAAATGCGGCTATCGGAGATGGAGGTGACGCTGGAGCTAATGGCAGTAGTGTTAATAGTAGCTCTATTGGGTTGTCAATGATAAAGACATGGCTAAGAAGCCAACCAACACATTCCATTGCGGAGAATAAGAACGATGATGGCGGATCAAAAACCAGAAATGCACAAAGTTTGTCACTTTCTATGAGCACTGGTTCTAGTTCGCCATTGCTCCAAACTAGCTCTGCCGGAGGAAATGGCGGTGGGGAGAGTTCTTCGTCGGAGAATAAGCAAATTAAGACTTCATCCGGTATGGATGCCAAAAATGGCGCCATTGAAGGTGTGCCAAGAAAGTCCATCGATACATTTGGACAAAGAACTTCTATTTATCGTGGCGTAACAAGGCATAGATGGACGGGTAGATACGAGGCTCATCTGTGGGACAACAGTTGCAGAAGAGAAGGACAAACTAGGAAAGGAAGACAAGGAGGTTATGATAAAGAAGATAAAGCAGCAAGAGCCTATGATTTAGCAGCACTTAAATATTGGGGTACCACTACTACTACAAATTTCCCAATTAGCAGCTACGAAAAAGAATTAGAAGAAATGAAGCACGTGACGAGACAAGAATACGTTGCATCTCTTAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCGATTTATCGTGGAGTAACGAGACACCATCAACATGGAAGATGGCAAGCAAGGATTGGAAGAGTCGCAGGAAACAAAGACCTATATTTAGGAACTTTCAGCACTCAAGAGGAAGCTGCAGAGGCTTACGACATTGCAGCCATAAAGTTCAGGGGGCTAAATGCTGTGACAAACTTTGATATGAACAGATATGATGTAAAATCAATCTTAGAAAGCAGTACTCTCCCCATTGGAGGAGCCTCGAAGAGATTGAAAGATGTTGATCAAGCGGAGATAATGTCCGTCGACGGACTAAGAACCGACGAAGAATCCATTTCTCAACTCACCGACCACGGAATGGGCGGCTACGGCAGCTTGAACCACCATGCCTGGCTGGGTTTTTCCTTCCAACAAGCTCGGTTTCAGCCCTACAATGGCTTCCACCACCCCTATGGTCAAAGGGGTTGGTGTAAGCAAGAGCAAGACTCCGAGGTGGTGTCCCATGGCTTCCATGATCTTCACCAGCTTCATACTGGAAACACCCACAATTTCTTTCAGCATAATCCTTCTCTGCATAATCTGACAGCGATGGATTCTTCCTCGATGGAGCATAGTTCTGGTTCTAACTCCATTCTTTACAGCAATGGAGGCGGAGGAGACGGAGGAAATAACAACAGTAATGGCGGAGCTATCGGATATGGAAGCTGCAACAATGGCAGCGGATATGGGATTCCGGTCGGAACAACGATAATTTCAAATGATCATGAAAATGGCGGTGGAGGGTACGAGAATCTTTTTGGAAATTCAGTGGATCCTTATCAGGGAAGGAACTTGTATTGTCTGTCGCAACAATCACCAGTATCAACGGCTGTGATTAAACCTAGCGCATATGATCAAGGGTCAGAGTGCAACAACTGGGTCCCAACTGCAGTTCCAACCCTAGCTCCGAGGTCTACCAACAATAACATGGCTGTGTGTCATGGAACTCCAGCTTTCACCATTTGGAATGACTCCTAG 2061 45.9 MASMNWLGFSLSPQEFSSQAGEDHSAQSSVSRLGFDSDEIAGHVSGDCFDHSSTPSLILPPPFELLESYNHRPNQSQDWNFKSTAMNSDNNYKENSSELSILMATTSCSSRNIETHHQPKLENFLGRENPNSFIYAANAAIGDGGDAGANGSSVNSSSIGLSMIKTWLRSQPTHSIAENKNDDGGSKTRNAQSLSLSMSTGSSSPLLQTSSAGGNGGGESSSSENKQIKTSSGMDAKNGAIEGVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEDKAARAYDLAALKYWGTTTTTNFPISSYEKELEEMKHVTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESSTLPIGGASKRLKDVDQAEIMSVDGLRTDEESISQLTDHGMGGYGSLNHHAWLGFSFQQARFQPYNGFHHPYGQRGWCKQEQDSEVVSHGFHDLHQLHTGNTHNFFQHNPSLHNLTAMDSSSMEHSSGSNSILYSNGGGGDGGNNNSNGGAIGYGSCNNGSGYGIPVGTTIISNDHENGGGGYENLFGNSVDPYQGRNLYCLSQQSPVSTAVIKPSAYDQGSECNNWVPTAVPTLAPRSTNNNMAVCHGTPAFTIWNDS 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9463537 9467736 - Bpe004596.1 Bpe11g01266 111411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01266 686 Pfam AP2 domain 258 313 IPR001471 GO:0003700|GO:0006355
Bpe11g01266 686 Pfam AP2 domain 357 407 IPR001471 GO:0003700|GO:0006355
Bpe11g01266 686 SUPERFAMILY DNA-binding domain 356 416 IPR016177 GO:0003677
Bpe11g01266 686 SMART rav1_2 357 421 IPR001471 GO:0003700|GO:0006355
Bpe11g01266 686 SMART rav1_2 258 327 IPR001471 GO:0003700|GO:0006355
Bpe11g01266 686 MobiDBLite consensus disorder prediction 186 234 - -
Bpe11g01266 686 SUPERFAMILY DNA-binding domain 257 323 IPR016177 GO:0003677
Bpe11g01266 686 CDD AP2 257 323 IPR001471 GO:0003700|GO:0006355
Bpe11g01266 686 ProSiteProfiles AP2/ERF domain profile. 357 415 IPR001471 GO:0003700|GO:0006355
Bpe11g01266 686 MobiDBLite consensus disorder prediction 175 248 - -
Bpe11g01266 686 ProSiteProfiles AP2/ERF domain profile. 258 321 IPR001471 GO:0003700|GO:0006355
Bpe11g01266 686 PANTHER BNAC02G44180D PROTEIN 5 684 - -
Bpe11g01266 686 PRINTS Ethylene responsive element binding protein signature 397 417 IPR001471 GO:0003700|GO:0006355
Bpe11g01266 686 PRINTS Ethylene responsive element binding protein signature 259 270 IPR001471 GO:0003700|GO:0006355
Bpe11g01266 686 CDD AP2 356 415 IPR001471 GO:0003700|GO:0006355
Bpe11g01266 686 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 684 - -
Bpe11g01266 686 Gene3D AP2/ERF domain 258 323 IPR036955 GO:0003700|GO:0006355
Bpe11g01266 686 Gene3D AP2/ERF domain 357 417 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00465 Bpe-Chr2:3022571 Bpe11g01266 Bpe-Chr11:9463537 2.76E-89 dispersed
Bpe04g00142 Bpe-Chr4:956633 Bpe11g01266 Bpe-Chr11:9463537 1.25E-106 dispersed
Bpe08g00699 Bpe-Chr8:8144067 Bpe11g01266 Bpe-Chr11:9463537 2.34E-08 dispersed
Bpe10g00016 Bpe-Chr10:280149 Bpe11g01266 Bpe-Chr11:9463537 1.75E-08 dispersed
Bpe11g00910 Bpe-Chr11:6744803 Bpe11g01266 Bpe-Chr11:9463537 1.05E-123 dispersed
Bpe11g01266 Bpe-Chr11:9463537 Bpe15g00266 Bpe-Chr15:14018552 1.59E-88 dispersed
Bpe13g00463 Bpe-Chr13:12161863 Bpe11g01266 Bpe-Chr11:9463537 1.25E-06 dispersed
Bpe11g01266 Bpe-Chr11:9463537 Bpe08g01222 Bpe-Chr8:13820585 3.16E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22093 PF00847 AP2 2.30E-08 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01266 K09285 - qsu:111984882 842.417