Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01275 ATGGAGTTCGATTCCGGAATTCCTTTGCCCCGAGCGGCAGTGACGGAAGGGCCGTCCTCAGCTCTGTCGCCGTCGTTGAGCGAAGATGCGTTGTGGCAAATGAATTTGAGATCAAGCGAATCAATGGAATCTGGCTCATATCCTGAGCGTCCAGGAGAGGCAGATTGTTCTTATTACATCAGAACCGGCCTATGTAGATTTGGAGCAACTTGCCGTTTTAACCATCCTCCTGACAGAAAGCTGGCGATTGCCACTGCAAGGATGAAGGGGGAATATCCGGAGAGATTTGGACAGCCGGAATGTCAGGCAAATTACTACCTGAAGACCGCAACCTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTCGAGACAAGGCCGGGATTGCTGGAAGAGTTTCCTTAAACGTCTTAGGATATCCGCTTCGCCCGAACGAGATCGAATGTGCATATTATTTACGAACCGGACTGTGCAAATTTGGGAGTACCTGCAAATTCCATCACCCTCAACCGACGAATATGATGGTTTCCTTACACGGGTCTCCTGTTTATCCAGCCATCCAATCTCCGACTACTAGTCAGCAGTCGTATCAAGGAGGAATTACGAATTGGTCCAGAGCGTCTTTCATTCCGACTCCAAGAGGGCAGGGGCCTTCTAGTTATGCACCAGTTATTCTTCCTCAGGGACTGGTTTCAGTTCAAGGTTGGAATGCATACAGTGGTACTTTGGGATCAGTCTCTGCATCTGAGAATCAGCAGCCATCAGCAGCGAATAGTCAAGTTTATGGAGTTTTACGTCAAAATGAATCTGCTAGTACAGGATCTGAAGTATCTTTTTCTCCATTTCGCTCGAGCTCTGGTCCCGTTGGGTACTATGCATTGCAGAGGGACAATGTATTTCCCGAGAGACCTGGCCAGCCCGAGTGTCAGTTTTACATGAAAACCGGTGACTGCAAATTTGGCTTTGTTTGTAGATTCCATCATCCGAGAGAGAGATTAATACCGGCTCCGGATTGTGTTTTGAGCCCCCTCGGCCTTCCCTTGCGTCCGGGGGAACCTTTATGCCTGTTCTATTCTCGATATGGTATCTGCAAGTTTGGTCCAAGCTGCAAATTCGACCACCCGATGGGTATCTTCTCGCACAATCTCTCTGCATCACAGTCGTCGGATTACCCGGTTCATCGCTTATTAGTTTCATCACCTGGAGCATCAGGTCTAAATTTGTCACCTGAAGGCCTGATCGAAGGAGGCCATACGCAGCCGAGGAGACTTTCACTTTCAGAGACTAGACAGATGTCTTCTAGCGGTGATCATATCAACCCGGACAGGTGA 1332 48.72 MEFDSGIPLPRAAVTEGPSSALSPSLSEDALWQMNLRSSESMESGSYPERPGEADCSYYIRTGLCRFGATCRFNHPPDRKLAIATARMKGEYPERFGQPECQANYYLKTATCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGLCKFGSTCKFHHPQPTNMMVSLHGSPVYPAIQSPTTSQQSYQGGITNWSRASFIPTPRGQGPSSYAPVILPQGLVSVQGWNAYSGTLGSVSASENQQPSAANSQVYGVLRQNESASTGSEVSFSPFRSSSGPVGYYALQRDNVFPERPGQPECQFYMKTGDCKFGFVCRFHHPRERLIPAPDCVLSPLGLPLRPGEPLCLFYSRYGICKFGPSCKFDHPMGIFSHNLSASQSSDYPVHRLLVSSPGASGLNLSPEGLIEGGHTQPRRLSLSETRQMSSSGDHINPDR 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9552192 9554923 + Bpe004605.1 Bpe11g01275 111420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01275 443 MobiDBLite consensus disorder prediction 422 443 - -
Bpe11g01275 443 SUPERFAMILY CCCH zinc finger 146 171 IPR036855 GO:0046872
Bpe11g01275 443 MobiDBLite consensus disorder prediction 1 25 - -
Bpe11g01275 443 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Bpe11g01275 443 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Bpe11g01275 443 SMART c3hfinal6 95 124 IPR000571 GO:0046872
Bpe11g01275 443 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Bpe11g01275 443 SMART c3hfinal6 50 77 IPR000571 GO:0046872
Bpe11g01275 443 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 77 IPR000571 GO:0046872
Bpe11g01275 443 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 170 IPR000571 GO:0046872
Bpe11g01275 443 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 105 124 IPR000571 GO:0046872
Bpe11g01275 443 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 376 IPR000571 GO:0046872
Bpe11g01275 443 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 330 IPR000571 GO:0046872
Bpe11g01275 443 ProSiteProfiles Zinc finger C3H1-type profile. 95 125 IPR000571 GO:0046872
Bpe11g01275 443 SUPERFAMILY CCCH zinc finger 54 78 IPR036855 GO:0046872
Bpe11g01275 443 MobiDBLite consensus disorder prediction 408 443 - -
Bpe11g01275 443 Gene3D - 128 178 - -
Bpe11g01275 443 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 12 440 - -
Bpe11g01275 443 SUPERFAMILY CCCH zinc finger 307 333 IPR036855 GO:0046872
Bpe11g01275 443 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Bpe11g01275 443 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Bpe11g01275 443 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Bpe11g01275 443 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
Bpe11g01275 443 PANTHER PROTEIN PHOSPHATASE RELATED 12 440 - -
Bpe11g01275 443 Gene3D - 49 127 - -
Bpe11g01275 443 Gene3D - 302 385 - -
Bpe11g01275 443 SUPERFAMILY CCCH zinc finger 352 376 IPR036855 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01275 Bpe-Chr11:9552192 Bpe13g00654 Bpe-Chr13:13357877 3.39E-88 dispersed
Bpe11g01275 Bpe-Chr11:9552192 Bpe09g00685 Bpe-Chr9:15427289 0 wgd
Bpe11g01275 Bpe-Chr11:9552192 Bpe09g00685 Bpe-Chr9:15427289 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22094 PF00642 zf-CCCH 1.70E-09 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01275 - - qsu:112012560 727.628