Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe11g01275 | ATGGAGTTCGATTCCGGAATTCCTTTGCCCCGAGCGGCAGTGACGGAAGGGCCGTCCTCAGCTCTGTCGCCGTCGTTGAGCGAAGATGCGTTGTGGCAAATGAATTTGAGATCAAGCGAATCAATGGAATCTGGCTCATATCCTGAGCGTCCAGGAGAGGCAGATTGTTCTTATTACATCAGAACCGGCCTATGTAGATTTGGAGCAACTTGCCGTTTTAACCATCCTCCTGACAGAAAGCTGGCGATTGCCACTGCAAGGATGAAGGGGGAATATCCGGAGAGATTTGGACAGCCGGAATGTCAGGCAAATTACTACCTGAAGACCGCAACCTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTCGAGACAAGGCCGGGATTGCTGGAAGAGTTTCCTTAAACGTCTTAGGATATCCGCTTCGCCCGAACGAGATCGAATGTGCATATTATTTACGAACCGGACTGTGCAAATTTGGGAGTACCTGCAAATTCCATCACCCTCAACCGACGAATATGATGGTTTCCTTACACGGGTCTCCTGTTTATCCAGCCATCCAATCTCCGACTACTAGTCAGCAGTCGTATCAAGGAGGAATTACGAATTGGTCCAGAGCGTCTTTCATTCCGACTCCAAGAGGGCAGGGGCCTTCTAGTTATGCACCAGTTATTCTTCCTCAGGGACTGGTTTCAGTTCAAGGTTGGAATGCATACAGTGGTACTTTGGGATCAGTCTCTGCATCTGAGAATCAGCAGCCATCAGCAGCGAATAGTCAAGTTTATGGAGTTTTACGTCAAAATGAATCTGCTAGTACAGGATCTGAAGTATCTTTTTCTCCATTTCGCTCGAGCTCTGGTCCCGTTGGGTACTATGCATTGCAGAGGGACAATGTATTTCCCGAGAGACCTGGCCAGCCCGAGTGTCAGTTTTACATGAAAACCGGTGACTGCAAATTTGGCTTTGTTTGTAGATTCCATCATCCGAGAGAGAGATTAATACCGGCTCCGGATTGTGTTTTGAGCCCCCTCGGCCTTCCCTTGCGTCCGGGGGAACCTTTATGCCTGTTCTATTCTCGATATGGTATCTGCAAGTTTGGTCCAAGCTGCAAATTCGACCACCCGATGGGTATCTTCTCGCACAATCTCTCTGCATCACAGTCGTCGGATTACCCGGTTCATCGCTTATTAGTTTCATCACCTGGAGCATCAGGTCTAAATTTGTCACCTGAAGGCCTGATCGAAGGAGGCCATACGCAGCCGAGGAGACTTTCACTTTCAGAGACTAGACAGATGTCTTCTAGCGGTGATCATATCAACCCGGACAGGTGA | 1332 | 48.72 | MEFDSGIPLPRAAVTEGPSSALSPSLSEDALWQMNLRSSESMESGSYPERPGEADCSYYIRTGLCRFGATCRFNHPPDRKLAIATARMKGEYPERFGQPECQANYYLKTATCKFGATCKFHHPRDKAGIAGRVSLNVLGYPLRPNEIECAYYLRTGLCKFGSTCKFHHPQPTNMMVSLHGSPVYPAIQSPTTSQQSYQGGITNWSRASFIPTPRGQGPSSYAPVILPQGLVSVQGWNAYSGTLGSVSASENQQPSAANSQVYGVLRQNESASTGSEVSFSPFRSSSGPVGYYALQRDNVFPERPGQPECQFYMKTGDCKFGFVCRFHHPRERLIPAPDCVLSPLGLPLRPGEPLCLFYSRYGICKFGPSCKFDHPMGIFSHNLSASQSSDYPVHRLLVSSPGASGLNLSPEGLIEGGHTQPRRLSLSETRQMSSSGDHINPDR | 443 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9552192 | 9554923 | + | Bpe004605.1 | Bpe11g01275 | 111420 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe11g01275 | 443 | MobiDBLite | consensus disorder prediction | 422 | 443 | - | - | |
Bpe11g01275 | 443 | SUPERFAMILY | CCCH zinc finger | 146 | 171 | IPR036855 | GO:0046872 | |
Bpe11g01275 | 443 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Bpe11g01275 | 443 | SMART | c3hfinal6 | 143 | 170 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | SMART | c3hfinal6 | 349 | 376 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | SMART | c3hfinal6 | 95 | 124 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | SMART | c3hfinal6 | 303 | 330 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | SMART | c3hfinal6 | 50 | 77 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 52 | 77 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 148 | 170 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 105 | 124 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 351 | 376 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 305 | 330 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | ProSiteProfiles | Zinc finger C3H1-type profile. | 95 | 125 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | SUPERFAMILY | CCCH zinc finger | 54 | 78 | IPR036855 | GO:0046872 | |
Bpe11g01275 | 443 | MobiDBLite | consensus disorder prediction | 408 | 443 | - | - | |
Bpe11g01275 | 443 | Gene3D | - | 128 | 178 | - | - | |
Bpe11g01275 | 443 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED | 12 | 440 | - | - | |
Bpe11g01275 | 443 | SUPERFAMILY | CCCH zinc finger | 307 | 333 | IPR036855 | GO:0046872 | |
Bpe11g01275 | 443 | ProSiteProfiles | Zinc finger C3H1-type profile. | 143 | 171 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | ProSiteProfiles | Zinc finger C3H1-type profile. | 349 | 377 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | ProSiteProfiles | Zinc finger C3H1-type profile. | 303 | 331 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | ProSiteProfiles | Zinc finger C3H1-type profile. | 50 | 78 | IPR000571 | GO:0046872 | |
Bpe11g01275 | 443 | PANTHER | PROTEIN PHOSPHATASE RELATED | 12 | 440 | - | - | |
Bpe11g01275 | 443 | Gene3D | - | 49 | 127 | - | - | |
Bpe11g01275 | 443 | Gene3D | - | 302 | 385 | - | - | |
Bpe11g01275 | 443 | SUPERFAMILY | CCCH zinc finger | 352 | 376 | IPR036855 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe11g01275 | Bpe-Chr11:9552192 | Bpe13g00654 | Bpe-Chr13:13357877 | 3.39E-88 | dispersed | |
Bpe11g01275 | Bpe-Chr11:9552192 | Bpe09g00685 | Bpe-Chr9:15427289 | 0 | wgd | |
Bpe11g01275 | Bpe-Chr11:9552192 | Bpe09g00685 | Bpe-Chr9:15427289 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22094 | PF00642 | zf-CCCH | 1.70E-09 | CL0537 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe11g01275 | - | - | qsu:112012560 | 727.628 |