Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01296 ATGGCCTCTCTTTCCTGCTCCGCCGTTGATTTGGTGCCTCTGCTCGGCGCCACGAGCTCCAACTCCACAGCCATGGCGGAGTTCTTCTGTACAAGATTCAACGCCATAGCCAACAAGCTTTCCGACACTACTTATGCAGTGGATAATACTTATCTCTTATTCTCTGCGTATCTCGTTTTCGCTATGCAGCTTGGATTCGCCATGCTTTGCGCTGGATCTGTTCGAGCGAAGAACACGATGAACATTATGCTCACTAACGTCCTTGACGCCGCCGCCGGAGGCCTCTCGTACTACCTCTTTGGTTACGCTTTCGCCTTTGGATCGCCTTCTGATGGCTTCATCGGCCGTCATTTTTTTGGTCTCACTGGTTTTCCGTCGGTTTTGGGAGATTACAGTTTGTTTCTCTACCAGTGGGCTTTCGCGATCGCCGCAGCCGGAATTACCAGCGGTTCAATCGCCGAGAGAACGCAGTTTGTTGCTTATCTCGTATACTCCTCTTTCTTGACTGGTTTCGTCTACCCGGTTGTGTCTCATTGGTTCTGGTCAGCTGACGGGTGGGCTAGCCCGATCCGAAGCGACAATAACTTACTGTTCGGGTCCGGGGCGATTGACTTCGCCGGATCAGGGGTTGTTCACATGGTGGGCGGGATAGCGGGGTTGTGGGGCGCATTGATCGAAGGCCCGCGAATAGGCCGGTTCGACCGATCCGGACGATCCGTCGCGTTGCGTGGACACAGCGCGTCGCTAGTTGTTCTCGGAACATTTTTACTTTGGTTCGGTTGGTACGGGTTTAACCCGGGATCGTTTCTGACGATCTTGAAAGGGTACGGCGACGGAGGTAACTACTACGGACAGTGGAGTGCCGTCGGCCGAACAGCAGTCACGACCACACTGGCTGGTTGCACGGCAGCACTCACAACGCTATTCGGCAAGCGCTTAATCGCCGGTCACTGGAACGTCACCGACGTGTGCAACGGACTACTCGGGGGTTTCGCCGCCATCACCTCCGGTTGCGCAGTGGTTGAACCCTGGGCGGCAATACTCTGTGGATTCATCGCTGCCTGGGTTTTAATCGGGTTCAACATGCTCGCAGAGAAGTTCAACTACGACGATCCTCTCGAAGCGGCGCAACTCCACGGCGGATGCGGATCGTGGGGGTTGATATTCACCGGGCTCTTTGCCAGTGAGGCTTACGTCAATGAGGTCTACTCGAACAAGGTGGGGAGACCGTACGGACTATTCATGGGCGGCGGAGGGAAACTACTAGCGGCCCAAATCATCCAGATCTTGGTGATCACCGGGTGGGTCTCGGCCACAATGGCCCCGCTATTTTATGCAATGCATAAACTGAAGATATTGAGGATATCAAGAGATGATGAGATGGCAGGTATGGATCTGACTAGGCATGGAGGCTTTGCTTACGTGTACCACGACCAGGATGACGGGTCAGGGAGTAGGCCCGGGTTTATGATGACCAAAGTGGAGCCCAATTCAGGAAGTCCGGTTGGCGATCAGAAACTTTCTCCCACGGCCGTCTGA 1539 54.52 MASLSCSAVDLVPLLGATSSNSTAMAEFFCTRFNAIANKLSDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGYAFAFGSPSDGFIGRHFFGLTGFPSVLGDYSLFLYQWAFAIAAAGITSGSIAERTQFVAYLVYSSFLTGFVYPVVSHWFWSADGWASPIRSDNNLLFGSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFLTILKGYGDGGNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITSGCAVVEPWAAILCGFIAAWVLIGFNMLAEKFNYDDPLEAAQLHGGCGSWGLIFTGLFASEAYVNEVYSNKVGRPYGLFMGGGGKLLAAQIIQILVITGWVSATMAPLFYAMHKLKILRISRDDEMAGMDLTRHGGFAYVYHDQDDGSGSRPGFMMTKVEPNSGSPVGDQKLSPTAV 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9691859 9693397 + Bpe004625.1 Bpe11g01296 111441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01296 512 TIGRFAM amt: ammonium transporter 48 474 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bpe11g01296 512 MobiDBLite consensus disorder prediction 486 512 - -
Bpe11g01296 512 MobiDBLite consensus disorder prediction 498 512 - -
Bpe11g01296 512 PANTHER AMMONIUM TRANSPORTER 1 505 - -
Bpe11g01296 512 Gene3D Ammonium transporter AmtB like domains 27 487 IPR029020 -
Bpe11g01296 512 SUPERFAMILY Ammonium transporter 45 455 - -
Bpe11g01296 512 Pfam Ammonium Transporter Family 51 474 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bpe11g01296 512 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bpe11g01296 512 PANTHER AMMONIUM TRANSPORTER 1 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00093 Bpe-Chr1:578981 Bpe11g01296 Bpe-Chr11:9691859 0 dispersed
Bpe03g00930 Bpe-Chr3:28966235 Bpe11g01296 Bpe-Chr11:9691859 0 dispersed
Bpe08g00077 Bpe-Chr8:420065 Bpe11g01296 Bpe-Chr11:9691859 0 dispersed
Bpe09g00407 Bpe-Chr9:6555778 Bpe11g01296 Bpe-Chr11:9691859 0 dispersed
Bpe11g01296 Bpe-Chr11:9691859 Bpe13g00701 Bpe-Chr13:13612559 2.25E-23 dispersed
Bpe11g01296 Bpe-Chr11:9691859 Bpe14g01289 Bpe-Chr14:9803296 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01296 K03320 K07573 tcc:18600025 853.588